Basic Information

Insect: Pheosia gnoma
Gene Symbol: -
Assembly: GCA_905404115.1
Location: FR989906.1:8646182-8648916[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00016 0.0094 16.4 0.1 1 23 17 39 17 39 0.96

2 16 0.2 11 6.7 4.4 1 23 60 82 60 82 0.95

3 16 5.5e-05 0.0032 17.9 0.0 1 23 103 125 103 125 0.91

4 16 0.022 1.3 9.7 0.9 5 23 133 152 130 152 0.95

5 16 0.0015 0.086 13.4 0.7 1 23 240 262 240 262 0.96

6 16 4.2e-06 0.00024 21.4 1.9 1 23 268 290 268 290 0.99

7 16 8.8e-06 0.0005 20.4 1.6 1 23 296 318 296 318 0.98

8 16 5.8e-08 3.3e-06 27.3 0.5 1 23 324 346 324 346 0.99

9 16 1.4e-06 7.9e-05 22.9 0.2 1 23 352 374 352 374 0.98

10 16 0.00016 0.0092 16.4 0.5 1 20 380 399 380 402 0.92

11 16 0.00012 0.0069 16.8 0.4 3 23 412 433 410 433 0.96

12 16 1e-05 0.00058 20.2 1.8 1 23 439 462 439 462 0.98

13 16 0.00013 0.0076 16.7 4.3 1 23 468 491 468 491 0.95

14 16 0.0066 0.38 11.3 0.5 1 23 499 522 499 522 0.97

15 16 0.61 35 5.2 0.2 2 19 526 543 525 545 0.93

16 16 0.23 13 6.5 0.7 3 23 551 571 550 571 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00016	0.0094	16.4	0.1	1	23	17	39	17	39	0.96
2	16	0.2	11	6.7	4.4	1	23	60	82	60	82	0.95
3	16	5.5e-05	0.0032	17.9	0.0	1	23	103	125	103	125	0.91
4	16	0.022	1.3	9.7	0.9	5	23	133	152	130	152	0.95
5	16	0.0015	0.086	13.4	0.7	1	23	240	262	240	262	0.96
6	16	4.2e-06	0.00024	21.4	1.9	1	23	268	290	268	290	0.99
7	16	8.8e-06	0.0005	20.4	1.6	1	23	296	318	296	318	0.98
8	16	5.8e-08	3.3e-06	27.3	0.5	1	23	324	346	324	346	0.99
9	16	1.4e-06	7.9e-05	22.9	0.2	1	23	352	374	352	374	0.98
10	16	0.00016	0.0092	16.4	0.5	1	20	380	399	380	402	0.92
11	16	0.00012	0.0069	16.8	0.4	3	23	412	433	410	433	0.96
12	16	1e-05	0.00058	20.2	1.8	1	23	439	462	439	462	0.98
13	16	0.00013	0.0076	16.7	4.3	1	23	468	491	468	491	0.95
14	16	0.0066	0.38	11.3	0.5	1	23	499	522	499	522	0.97
15	16	0.61	35	5.2	0.2	2	19	526	543	525	545	0.93
16	16	0.23	13	6.5	0.7	3	23	551	571	550	571	0.94

Sequence Information

Coding Sequence: ATGAAACTGGACCGAGAATTAGTTGTATCGGTTGAGAAGATCGCCGTGTATACATGTGAAAGATGTCCAAGTGTATTTGCGGACCCTTTCAGCTTGAAGAAACATATAGCTGACCACGACGAGAGATTTCATGCACACATTGGCAGTGCACATGTGGTGTTAATTAATCTGACACTCCATCAGTGTCGGGAGTGTGCTCAGTGCTTCCCGACCAGGAGGGAGTTTGTGCTCCACAAGGTGAAGCACATACAGAACACCGTGAAAATTGCCAGGACCACGGGGCAAAATGGATTTATATCTAAGCCATATCAATGCCCAGATTGCGACTACAGTTTTGCAGCTGCAAGCACCCTGGAAGCTCATTCTGTGCTTCACCAACCGTTTCCGCATATCTGCGTGTGTGGAATCGGATACTATACCAAGAAAGACCTCTGCAGCCACATAAAAATAGTTCATGAAAATAGCACTAAACACCCTATCATACTACCATGGACCCCTAAAATTGAATTTGCTGCTGTACAAGAGAACAAACCGGACATTGCAATCAACGCATTGGCAAGAGGACCCAAATTAAAAGCAAATCTATTATTTAAAACTGCTACAACTAGGACGCCAAATACAAAACGAAAAGTTCAAATGGAATTAAAACATAATATTAAGCCAACACATAAAATTATGACTCCCAATATTTATATAGAAATGACAAGTGACTGGAAATTCCTGTGTCCGGTCTGCAAAAAGAAAATAAACTCAAAGATGGGTCTGTATGTACATTATCGAACTCACACTGGGGAGCGTCCGTATCAATGTAGAATCTGTAAGAAACGGTTCACCCAGACAGCTGCTCTGACACAACATTTGCAGAGGCATGCGGGCATCAGGAAGCATTCTTGTCCGAACTGTCAGAAAAGATTTTACTCGGCGGCAGATGTACGACTGCACATGCGTACCCACACTGGAATTAAACCTTACGAGTGTTCGTTTTGTGGTAAGTCGTTCAGCGACCCTTCGGCGTTCGCGCGTCACGAACGCACGCACACGGGAGACAAGCGCTACATTTGTCCGTACTGCCCGATGCGCTTCACGGACGCCAGCGGGCTCATCATGCACAGGCGACGGCACGAGAACACGAAGAAGTTCGCTTGCGACAAGTGCGACAAAATGTTCTACGACAGATCTTCCCTACTCCTCCACCGACCAGTCCACGACCCGATCAGAAAGAAACCATTCGGCTGCGACTACTGCTCCAGATACTTCACGGTAAAATCTAATTTGATAATGCATATCCAAAATGTGCATTTGCGAATCAGGAATTATAAATGCGACTATTGTAAAAAATCTTACTTTTTCGCATCGATGCTGGAGACTCATATGCAGGTGAACCATAAGAGCACTAGGAAACATAAATGTGATTATTGCGACAAAACTTACTGCATAAAGGGTTCCTTACAACGGCATTATATGTTGGCACATAAATATGTTAGAAAAAAATATTATGAATGTAACGAATGCTCTACCACGTGCGAGGACAAGTTAGGTATAACTCGACACATTTTGGTCGAGCACATAAACATAAGTTGTGATAAATGCTTACAATACTTCCCATCTCACAGTGCGTTGGATAATCACGAATTGGACGATGGCGAGTCGTGCGGTATTTGTGACGAGGTGTTCCATTGCAAGGGGGCGATGGAACAGCATTTAATAGTTCATACAATGGTTAAGAAAGACATTGAAAAGTAA
Protein Sequence: MKLDRELVVSVEKIAVYTCERCPSVFADPFSLKKHIADHDERFHAHIGSAHVVLINLTLHQCRECAQCFPTRREFVLHKVKHIQNTVKIARTTGQNGFISKPYQCPDCDYSFAAASTLEAHSVLHQPFPHICVCGIGYYTKKDLCSHIKIVHENSTKHPIILPWTPKIEFAAVQENKPDIAINALARGPKLKANLLFKTATTRTPNTKRKVQMELKHNIKPTHKIMTPNIYIEMTSDWKFLCPVCKKKINSKMGLYVHYRTHTGERPYQCRICKKRFTQTAALTQHLQRHAGIRKHSCPNCQKRFYSAADVRLHMRTHTGIKPYECSFCGKSFSDPSAFARHERTHTGDKRYICPYCPMRFTDASGLIMHRRRHENTKKFACDKCDKMFYDRSSLLLHRPVHDPIRKKPFGCDYCSRYFTVKSNLIMHIQNVHLRIRNYKCDYCKKSYFFASMLETHMQVNHKSTRKHKCDYCDKTYCIKGSLQRHYMLAHKYVRKKYYECNECSTTCEDKLGITRHILVEHINISCDKCLQYFPSHSALDNHELDDGESCGICDEVFHCKGAMEQHLIVHTMVKKDIEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01180495;
90% Identity: iTF_01180495;
80% Identity: -