Pgno002320.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pheosia gnoma
Gene Symbol
-
Assembly
GCA_905404115.1
Location
FR989922.1:2945887-2952265[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.032 1.8 9.2 0.6 1 23 80 102 80 102 0.98
2 28 0.022 1.3 9.7 0.4 2 23 130 152 129 152 0.95
3 28 0.6 34 5.2 5.7 2 23 176 198 175 198 0.95
4 28 0.062 3.5 8.3 1.0 2 23 203 224 203 224 0.96
5 28 9.7e-06 0.00055 20.3 0.7 1 23 229 252 229 252 0.96
6 28 0.3 17 6.1 1.6 2 23 262 284 261 284 0.89
7 28 0.00058 0.033 14.7 1.6 1 23 290 313 290 313 0.97
8 28 1.8e-05 0.001 19.5 2.0 2 23 318 339 317 339 0.97
9 28 2.3e-05 0.0013 19.1 1.3 1 23 345 367 345 367 0.98
10 28 0.0039 0.22 12.1 0.2 1 23 373 396 373 396 0.96
11 28 0.0077 0.44 11.2 0.7 1 23 471 493 471 493 0.98
12 28 0.0083 0.47 11.1 0.4 2 23 521 543 520 543 0.94
13 28 0.00099 0.057 13.9 3.4 1 23 566 588 566 588 0.98
14 28 0.16 9.4 7.0 0.9 2 23 593 614 593 614 0.96
15 28 4.9e-06 0.00028 21.2 1.7 1 23 619 642 619 642 0.96
16 28 0.17 9.6 6.9 1.2 2 23 652 674 651 674 0.92
17 28 0.00017 0.0097 16.4 1.0 1 23 680 703 680 703 0.97
18 28 0.15 8.3 7.1 3.6 3 23 709 729 708 729 0.97
19 28 0.021 1.2 9.8 0.7 1 23 776 798 776 798 0.98
20 28 0.025 1.4 9.5 0.3 2 23 826 848 825 848 0.95
21 28 0.0004 0.023 15.2 3.4 1 23 871 893 871 893 0.98
22 28 0.3 17 6.2 0.6 2 23 898 919 898 919 0.95
23 28 0.00016 0.0091 16.5 4.4 1 23 924 947 924 947 0.96
24 28 6.4 3.6e+02 2.0 3.7 2 23 957 979 956 979 0.88
25 28 0.00049 0.028 14.9 1.8 1 23 985 1008 985 1008 0.97
26 28 0.046 2.6 8.7 3.9 2 23 1013 1034 1012 1034 0.96
27 28 2e-06 0.00011 22.5 3.1 1 23 1040 1062 1040 1062 0.99
28 28 0.04 2.3 8.9 1.3 1 23 1071 1094 1071 1094 0.95

Sequence Information

Coding Sequence
ATGAAGTCCAGAAATCTCAGAGGTGCGAGCCGGCGTTTGAACCAGCGATCCTCGTTACCGAGGCAAGCGTTCTACCAACTTGGCTTGGGGTTAATGGATAAAGGATCATTCACAGACGGGAAACGCCGACAAGGACCGTTAGCCAGCATCTGGGACATGCCCCTATCGGAGCGTCACAACGTCTCCGTCATCCTCGGAAACACGACAGCGACACCCTTCATCTACTGCCGACACTTCTTCAAATGCTTCTACTGCAGAGAGCAGTACTCCGACATTCAAGCTTTATTAGTCCATACAGTGACTCACCCCGTACCCGACCAAGCTGTAATCTTAAAAGAACATCTTCCAAGAGGTAGAAGAACAATTAACGTTGACATATCCGATTTAAAATGCCGAATTTGCGAGCAAACATTGAAAGACTTGGATGATGTTCGCAAACATTTGACTTCTGAACACAAGAAAGATTTTACGCAGTCGGGAAACGGTCTTGTGGCTTACGATTTGACGACCAAAAATGGTCAGTTATCCTGTCACTTGTGCAGTAAGAAAAACTTTCACACTTTCACTCTGCTCAATCGGCATATGAATGTGCACTTCAGCAATGCTGTCTGCGAAACGTGCGGTGCGGGATTCATGACGCATCAAAGGTTAACAAAGCATAAAGAGATACATCTCCCAGGAGGCTTCCCATGTAATAGATGTAGCAAAGTATATACGTCGAGTTCCAATTTGCAGTACCATATAGAAAAAGCTCATGAAGGTCTATCAACTATGCGTATGCTGCGATGTCCTCACTGCCCAGAAAGATTTGTCGAGCATGTCCGTAAGCTTAGACATTTGAAGGAAGCTCACGGTATAACGTTCACATTTGAATGTGAAGTATGCAAGAGTGTGTTTACGAGCCGCAGATCATTAACTGAGCACACAAATAAATTTCACTCGGAGAAGAATCAGTGTGGAATCTGTAAAAAGAGTTTTAGTAGTAAGACGACGTTGAAGAATCATCGCGCGTCTCATACCGGTGAAAGAAACTTTGTGTGCGGGGTTTGTCAGAAGACGTACAGGTACCAGAGAGGCTTGAAACTGCATATGAAGAGCCACGAGCAAGGGGAGCAGTTCAAATGTTTAGAGTGTGGTTCTGGGTTTCAGAATGGAAACGATTTGAACAAGCACATTAAGGAATGGCATCCGAGAGTTGAGTTTCTGGTGCAGCCTGAGTTTGAAATAGATGATGGGCTGAAGAAAAATCTAAACAACACATATTTTGTTTTCCCAGGATCATTCACAGACGGAAAACGCCGCCAAGGACCGTTAGCCAGCATCTGGGACATGCCCCTATCAGAGCGTCACAACGTCTCAATATTTCTCGGAAACACGACAGCAACACCCTTCATCTACTGCCGACACTTCTTCAAATGCTTTTACTGCAGAGAGCAGTACTCCGACGTCACTGCTTTATTAGTCCATACACTAACACACACCGTACCTGATCAAGCTGTTATATTGAAAGAACATCTCCCAAGAGGCAGAAGAATAATCAATGTTGACATATCAGAGTTAAAATGCAGAATTTGCGAGCAAACATTCACAGACCTTGATGTTGTACGCAAACATTTGACTTCTGAACACAAGAAAGAGTTCACGGAGTCGGGAAACGGTCTAGTAGCTTACGATTTAACAACCAAGAAAGGACAGTTCTCCTGCCACTTATGCAGTAAGAATTTCCAAACGTTTATACTGTTGAGTCGGCATATGAATGTGCACTTCAGCAATGCTGTCTGCGAAACATGTGGCGCTGGATTTATGACGCATCAAAGGTTATCGAAGCATAAAGAGATACATCTCCCAGGAGGCTTCCCGTGCGATAGATGTAGCAAAGTATATACAACGAGCTCTAATTTGAAACATCACATTGAAAAGGCTCACGAAGGTGCTACAAAGATGCGTATGCTCATATGTCCTCATTGCCCAGAAAGATTTGTGGAACATGATCGCAAGCTTAGACATTTGAAGGAAGCTCACGGTATAACGTTCACTTTTGAATGTGAAGTGTGCAAAGCTGTGTTCAATAGCCGACGGTCGCTGACAAAGCATGCGAATAAATTTCATTCGGAGAAGAATCTGTGTGAAATTTGCATGAAGAGTTTTAGTTGTAAGACAAATTTGAAGAATCATCGCGCGTCTCATACCGGAATATTAGCAGAGGGGAAACGCCGACAAGGGCCGCTGACCAGCATCTGGGAGATGACGCTATCGGAGCGCCAAAATGCCTCAGTCCTCCTCGGAAACTCGACAGCCACACCATTCATCTACTGCCGATATTACTTCAAATGTTTCTACTGCAGAGAACAGTACTCCGACATTAAGGCATTGCTTGTCCATACAGTCACACACGCTATTCCTGAACAAACTGTAATCCTCAAAGAACATCTCCCAAAAGGTAGAAGAACCATCAAAGTTGACATATCAGAGTTGAAATGCAGAATTTGCGAGCAAATATTCAAAGAACTTGATGAAATACGCAAGCATTTGACGTCAGAGCATAATAAAGAGTTCACGCAGTCGGGAAACGGTCTTGTATCTTACAATTTAACGAGCAAGAATGGTCAGTTCTCTTGTCACTTATGCAGTAAGAATTTCCAAACTTTTATACTGCTGAATCGGCATATGAATGTACACTTCAGCAATGCTGTGTGCGAAACATGTGGCGCTGGATTTATGACCCATCAAAGGTTATTACAACATAAAGAGATACATCTTCCAGGAGGCTATCCATGTAATACATGCAGCAAAGTGTATACAACTAGTTCAAATTTAAAATATCACAAAGAGAAATGTCACGAGGGCGCAACAAAGATGCGTATGCTGAGATGTACTCACTGCGAAGAAAGATTCGTGGAACATTTTCGCAAGCTCAAACATTTAAAGGAAGCCCATGGTATCACTTTCACTTTTGAATGTGAAGTGTGCAGAACAGTGTTCAACAGTCGTAGATCTTTAACTATGCATACAAATAAATTTCATTCGGTAAAAACTCAATGTGAAGTTTGTAAGAAAAGTTTTAGTTGTATGACAACTTTGAAGAAACATCTAGTATCTCATACGGGTGAGAGGAACTATGTTTGCGGGGTCTGTCAAAAGGCTTATAGGCACCAGAAGACCTTGAAGCAGCATATGAGGACGCATGTGCAAGGGGAGCAGCATATTAAGTTCAATTGTTCGGACTGTGGATCTGGGTTTCCGTGTCGAAGTGATTTTAATAGGCACGTCAAAGAGTGGCATCCAGGAAGTTATTTTGATTATGCTGTTAATTAA
Protein Sequence
MKSRNLRGASRRLNQRSSLPRQAFYQLGLGLMDKGSFTDGKRRQGPLASIWDMPLSERHNVSVILGNTTATPFIYCRHFFKCFYCREQYSDIQALLVHTVTHPVPDQAVILKEHLPRGRRTINVDISDLKCRICEQTLKDLDDVRKHLTSEHKKDFTQSGNGLVAYDLTTKNGQLSCHLCSKKNFHTFTLLNRHMNVHFSNAVCETCGAGFMTHQRLTKHKEIHLPGGFPCNRCSKVYTSSSNLQYHIEKAHEGLSTMRMLRCPHCPERFVEHVRKLRHLKEAHGITFTFECEVCKSVFTSRRSLTEHTNKFHSEKNQCGICKKSFSSKTTLKNHRASHTGERNFVCGVCQKTYRYQRGLKLHMKSHEQGEQFKCLECGSGFQNGNDLNKHIKEWHPRVEFLVQPEFEIDDGLKKNLNNTYFVFPGSFTDGKRRQGPLASIWDMPLSERHNVSIFLGNTTATPFIYCRHFFKCFYCREQYSDVTALLVHTLTHTVPDQAVILKEHLPRGRRIINVDISELKCRICEQTFTDLDVVRKHLTSEHKKEFTESGNGLVAYDLTTKKGQFSCHLCSKNFQTFILLSRHMNVHFSNAVCETCGAGFMTHQRLSKHKEIHLPGGFPCDRCSKVYTTSSNLKHHIEKAHEGATKMRMLICPHCPERFVEHDRKLRHLKEAHGITFTFECEVCKAVFNSRRSLTKHANKFHSEKNLCEICMKSFSCKTNLKNHRASHTGILAEGKRRQGPLTSIWEMTLSERQNASVLLGNSTATPFIYCRYYFKCFYCREQYSDIKALLVHTVTHAIPEQTVILKEHLPKGRRTIKVDISELKCRICEQIFKELDEIRKHLTSEHNKEFTQSGNGLVSYNLTSKNGQFSCHLCSKNFQTFILLNRHMNVHFSNAVCETCGAGFMTHQRLLQHKEIHLPGGYPCNTCSKVYTTSSNLKYHKEKCHEGATKMRMLRCTHCEERFVEHFRKLKHLKEAHGITFTFECEVCRTVFNSRRSLTMHTNKFHSVKTQCEVCKKSFSCMTTLKKHLVSHTGERNYVCGVCQKAYRHQKTLKQHMRTHVQGEQHIKFNCSDCGSGFPCRSDFNRHVKEWHPGSYFDYAVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-