Pgno002252.1
Basic Information
- Insect
- Pheosia gnoma
- Gene Symbol
- -
- Assembly
- GCA_905404115.1
- Location
- FR989922.1:2617228-2622790[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.015 0.86 10.2 2.3 1 23 9 31 9 31 0.98 2 24 0.027 1.6 9.4 0.0 2 23 60 82 59 82 0.94 3 24 0.00045 0.026 15.0 0.2 2 23 103 125 102 125 0.96 4 24 0.00013 0.0077 16.7 0.2 1 23 130 153 130 153 0.92 5 24 0.00084 0.048 14.2 1.2 1 23 158 181 158 181 0.97 6 24 0.00067 0.039 14.5 1.3 3 23 185 206 182 206 0.90 7 24 0.035 2 9.1 0.3 2 21 214 233 213 234 0.93 8 24 0.05 2.8 8.6 1.6 1 23 285 308 285 308 0.95 9 24 0.2 11 6.7 0.3 2 23 381 404 380 404 0.95 10 24 2.3e-05 0.0013 19.1 0.3 3 23 411 432 410 432 0.95 11 24 0.36 21 5.9 6.0 2 23 437 459 436 459 0.94 12 24 0.0023 0.13 12.8 0.5 1 23 464 487 464 487 0.93 13 24 3.6e-05 0.002 18.5 5.5 1 23 491 514 491 514 0.97 14 24 0.0092 0.53 10.9 2.1 2 23 521 542 520 542 0.96 15 24 0.042 2.4 8.8 0.2 1 23 589 612 589 612 0.92 16 24 0.003 0.17 12.4 0.0 2 23 643 665 642 665 0.94 17 24 0.0046 0.27 11.8 1.9 2 23 688 709 688 710 0.95 18 24 0.00069 0.04 14.4 1.7 1 23 715 738 715 738 0.97 19 24 0.14 7.9 7.2 0.2 1 23 743 766 743 766 0.87 20 24 0.0014 0.078 13.5 0.7 2 23 772 794 771 794 0.93 21 24 0.00023 0.013 15.9 0.5 2 23 802 824 801 824 0.97 22 24 0.08 4.6 7.9 0.0 2 23 831 852 830 852 0.95 23 24 2.7e-06 0.00015 22.0 1.1 1 23 858 880 858 880 0.94 24 24 7.2e-07 4.2e-05 23.8 0.2 1 23 886 909 886 909 0.96
Sequence Information
- Coding Sequence
- ATGCCATTCAAATGGCGCGGCAAATATATATGCTTCTATTGCGCCAAAAGTTCCACAGACTATTTAGAATTTAAAAAACACACCAATACTCATGGCCGCGACTGTGCTACTCAAAATTATGCTCTAAAACAAATCAAAGGTAACCAGATCGAGATTAAAATTGATGTTTCCGATGTTACTTGCGATTTATGTAACGAGCCTTTCACTCGATTTGCGGAGATAATCGATCATTTAATCGTTAAACATGGCTTAGAGTACGATAAGACCATCGTTACACCGTTCCAGGAGTATCGCCTAGTTGATATCCGTTGTCTGTACTGCGAGGAGCAGTTCTCTTATTTAGGTAATTTGATTAAGCACGTGAATAAACTGCACCCACAGAATTGCTTCATATGCAACGAGTGTGGCATCACTTATAATAAAAAAAGGGACTTGGTGAGACACATCGGTAATGTTCATAAGCTGGGGGGCTACCCTTGTGATTTGTGCAACCAAAACTTTGACACCCTACTGTCTCTACGTAAACATCGGAATAAAACGCATTTCAAGTGTTGCAATATTTGTAAACTCAAGTTTGCATCAATGTCGCTTTTAGAAAAGCATATTGAAGTCGAACATCCTGACACAGACGGCACCATGAAATGCAATAGCTGTACCAAAGAGTTTATCTCTGCTGTAGGCTTTAAACAGCATGTCAATAAATGTAAAATAAAAATTATCGCGCAAGGAGATACCGGCTTCACGGACATCGAAGATCAGACGCAGAACTATCGGAATTTAAAACAAATACGGCTGAACATACAATGCGTGCTCAATATGTCCAACGCAACACCTTTTAAATTTCTATCCAAATATTCATGTTTCTATTGCCTGAAAAGGTTTACCGAGTTTGAGGAAGTGAGACAACATACGAATTTGGAACATCCAGCGTGCGATCTTAAATCTAAGTCCATGAAGAAGTGTAGGGGCTCTAGAGTCTCCGTCAAAATCGATGTTACTGCCTTAGCGTGCAAGCTATGCGCTCTACCCATGGACAATTTGGATACACTTATCGATCATTTGATTTCGGAACATAAAGCGAAATATGACAAGTCGATCCAGGGCTGCTTAATACCCTTTCACATTATCAAAGACAACATACCGTGTCCGTTTTGTCCCAACCGCGCGTTTCATTACTTCGCAATGCTACTGCGCCACATAAACACTGAACACACCAATAACAACAGAATCTGCGACTTTTGCGGTCGTAGTTTTCGCAATGTCGCAAACTTAAAAGTCCATTTAAAGTACGCCCACACTGGGTCCTGTGAGTGTGACATCTGTGGCATGAAACACAAGAACCAGTCGTGTCTCGCCCGTCACAGGGCGAAAACTCACGATGTTAAAGACTTCAAGTGTCCGAAATGCCCCGAACTGTTCAAATCACCGTACCAAAAGCTAAAGCACTTGATTGACCTCCATAATATTGGGCACAAATGCAACTACTGCGACAAAATGTTCACGAAGAATTCGTTCATGAAGGACCATATACGGAGAACGCATTTGAAAGAGAAGAATATACGTTGCTCTGTGTGTTGCGAGAGCTTTTTTAATAAAGTTGCTTTGAGGAGACACATGGTGAAACACGACGGTGCCAAATTCAATACAGTGGAGGACAAATTTAAGAAAATGGAAGTCGCACGCAAGCTATCAATAAAAAGGCGTAACGTTGAGTACGTGCTGCAATATAGCAACGCGACGCCCTTCATGTGGCACAAGGGCAAATACAAATGCTTCTATTGCGCGGAAACTATGAAAGATCCGAGCGCGCTCCGCGACCACACGGTCAATGTACACCAACTCGCGAACCTGGAGCTAATCGTGTATGACAGAACGAAAAATAACAGGAATAGGGACGCTGCAGTCAAAATAGATGTTGCAGGACTCGTGTGCAAGCTCTGCCCTAAAGCCGTTAACAATTTAGAGGAGTTGATCCACCATTTGATCATAGCTCATGATGCTGAGTACGACGTCAGCGTACCAAACTGTCTCCTACCATTCAGGCTAGATAAAGACCAACCAACATGCCCAACGTGTGACATGAAATTCGTCTTCTTTGAATACTTACTGAGACACGCGAATAAACATCATCTGTCACACCATTACATCTGCGACGTCTGTGGCACGAGCTTCCAAGGGGAGAACCATTTGAAAATGCACTACAGATACTATCACCGGGAAGGGGGGTATACTTGTGAATATTGCGGGATTAGTCTGGCGACTTTATCTCGCAAGATTCTTCACGAGAAGAACGTTCATTTGGTGAATTTGTCCACCTGTCCACACTGTCCGGAGACATTCAAAAGTCCGTATCTAAAGAAACTTCATTTGGCCAATGTTCATGGGGTTGAGGAGCTAAAAATCAAGTGTCCTCACTGCCCTAAAGTATACCCCCAGGAGTCTATAATGTCTCGGCACATGAGGAGAGTGCATTTACGGGAGAAGAACGTAGAATGCGAGATCTGCGGAGACAAGTTCTTCGGACCGTACGACGTCAAACTGCACATGGTGAAGCACAACGGAGAAAAGAAGTTCGTATGCACAGTTTGTGGGAAGAAGTTCTCCAAAAGGAGTAACTTGAACTCTCATTCCATTCTCCATACCAAGGAGAAGAATTATGTTTGCGCGGTATGCAACAAGGCGTTCGCGCAACAGAGCAATCTAAAGATACATATACAGAATAGACATTCTCAATTGGATCTAGACCAGAATGTTGATGAGTTAGATGACACTCAGCTGGTGCAGATGGAAATCATTCATGATGAGTTGGAAGGGACTGCAGGACAATATATACAGTGA
- Protein Sequence
- MPFKWRGKYICFYCAKSSTDYLEFKKHTNTHGRDCATQNYALKQIKGNQIEIKIDVSDVTCDLCNEPFTRFAEIIDHLIVKHGLEYDKTIVTPFQEYRLVDIRCLYCEEQFSYLGNLIKHVNKLHPQNCFICNECGITYNKKRDLVRHIGNVHKLGGYPCDLCNQNFDTLLSLRKHRNKTHFKCCNICKLKFASMSLLEKHIEVEHPDTDGTMKCNSCTKEFISAVGFKQHVNKCKIKIIAQGDTGFTDIEDQTQNYRNLKQIRLNIQCVLNMSNATPFKFLSKYSCFYCLKRFTEFEEVRQHTNLEHPACDLKSKSMKKCRGSRVSVKIDVTALACKLCALPMDNLDTLIDHLISEHKAKYDKSIQGCLIPFHIIKDNIPCPFCPNRAFHYFAMLLRHINTEHTNNNRICDFCGRSFRNVANLKVHLKYAHTGSCECDICGMKHKNQSCLARHRAKTHDVKDFKCPKCPELFKSPYQKLKHLIDLHNIGHKCNYCDKMFTKNSFMKDHIRRTHLKEKNIRCSVCCESFFNKVALRRHMVKHDGAKFNTVEDKFKKMEVARKLSIKRRNVEYVLQYSNATPFMWHKGKYKCFYCAETMKDPSALRDHTVNVHQLANLELIVYDRTKNNRNRDAAVKIDVAGLVCKLCPKAVNNLEELIHHLIIAHDAEYDVSVPNCLLPFRLDKDQPTCPTCDMKFVFFEYLLRHANKHHLSHHYICDVCGTSFQGENHLKMHYRYYHREGGYTCEYCGISLATLSRKILHEKNVHLVNLSTCPHCPETFKSPYLKKLHLANVHGVEELKIKCPHCPKVYPQESIMSRHMRRVHLREKNVECEICGDKFFGPYDVKLHMVKHNGEKKFVCTVCGKKFSKRSNLNSHSILHTKEKNYVCAVCNKAFAQQSNLKIHIQNRHSQLDLDQNVDELDDTQLVQMEIIHDELEGTAGQYIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -