Basic Information

Transcription Factor Domain

TF Family: CUT
Domain: Homeobox|CUT
PFAM: PF02376
TF Group: Helix-turn-helix
Description: The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 0.9 5.6e+03 -2.5 0.0 4 19 61 76 59 78 0.83

2 2 1.1e-27 6.6e-24 83.8 0.0 4 70 213 280 210 287 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	0.9	5.6e+03	-2.5	0.0	4	19	61	76	59	78	0.83
2	2	1.1e-27	6.6e-24	83.8	0.0	4	70	213	280	210	287	0.94

Coding Sequence: ATGCTTGAAAATGAGATTCGCAGGCGAAGTCCAGAAATCTCAGAGATCGCCCAACTAGTGGAGGACGTGCGCCGACTCCAGGCGTCGCTAACAGCGCTGCAGGAGGCGCACGCGCAGCAGCTGCAGCGGCTGGAGGAGCGGCTCGACGAGAAGAAGCAGCACATTGCGAGGCTCGAGGCGCGCCTCGACACGCAGCGAGACTATGACGAGGTCAAGCGGGAGATCAACATGCTCCGAGCGCTCGACCTGGGCGCCAGCGAGCGTCCGCTAGAACGCAAGCCGGACCCGCTCCGCTCCCCGATAGCGGCGCCCGCGCTGCGGGACCGCTCGCTCGAGCGCGAGCGCAGCACCGAGCGGCGGGACGCAGGTCCCGACGAGTGGCCCAGCACGCCCCCGCCGCTCAACAACAACACCACGCACCACAACAACAACGGCCCCACGCCGCTGCCGCTCCCGCCGCCGAGCCCGTTCCGCTTCGAGGAGCACCGCACCTTCCGCTTCGCGGAGGACATGGGCCCGCTGCCGCCCGGCGCGCTCGTCGGCCGCCTCGGCGACTCCCTCATACCCAAGGGCGACCCCATGGAGGCGAGGCTGCAGGAGATGTTAAGATACAACATAGACAAATACGCGAACATGAACTTGGACACGTTGCACATAAGCCGGAGGGTGAGGGAGCTGTTGTCGGTGCACAACATCGGGCAGAGACTGTTCGCGAAGTACGTGCTGGGGTTGTCGCAGGGGACGGTGTCGGAGCTGCTGTCCAAGCCGAAGCCCTGGGACAAACTGACGGAGAAGGGGCGGGACTCGTACAGGAAGATGCACGCGTGGGCGTGCGACGAGGCCTCCATCATGCTGCTCAAATCACTCATCCCAAAAAAAGATACATCCATCAGCGAGCGTCGCGATCAGATGAAAAGCTTCGGCGCGTCCGTTACCGGTAATAACTAA
Protein Sequence: MLENEIRRRSPEISEIAQLVEDVRRLQASLTALQEAHAQQLQRLEERLDEKKQHIARLEARLDTQRDYDEVKREINMLRALDLGASERPLERKPDPLRSPIAAPALRDRSLERERSTERRDAGPDEWPSTPPPLNNNTTHHNNNGPTPLPLPPPSPFRFEEHRTFRFAEDMGPLPPGALVGRLGDSLIPKGDPMEARLQEMLRYNIDKYANMNLDTLHISRRVRELLSVHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDEASIMLLKSLIPKKDTSISERRDQMKSFGASVTGNN

Sequence clustering based on sequence similarity using MMseqs2