Pari002923.1
Basic Information
- Insect
- Phengaris arion
- Gene Symbol
- -
- Assembly
- GCA_963565745.1
- Location
- OY751431.1:42004265-42032923[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.7 3.4e+02 3.2 0.5 1 13 284 296 284 298 0.87 2 17 0.58 72 5.3 0.2 2 23 466 487 465 487 0.87 3 17 0.037 4.7 9.1 0.4 1 23 497 520 497 520 0.94 4 17 0.071 8.9 8.2 0.8 2 23 655 676 654 676 0.95 5 17 2.5 3.2e+02 3.3 0.2 1 23 690 714 690 714 0.89 6 17 0.00015 0.019 16.6 0.4 2 23 721 744 720 744 0.97 7 17 0.075 9.4 8.1 0.2 1 23 750 772 750 772 0.93 8 17 0.0018 0.22 13.2 4.4 1 23 778 800 778 800 0.98 9 17 2 2.5e+02 3.7 0.0 3 20 812 829 810 831 0.88 10 17 0.03 3.8 9.4 0.2 1 23 909 931 909 931 0.98 11 17 2.7 3.4e+02 3.2 6.2 1 23 938 960 938 960 0.95 12 17 0.0015 0.19 13.5 1.8 1 23 993 1016 993 1016 0.95 13 17 0.0061 0.77 11.5 1.8 1 23 1023 1046 1023 1046 0.97 14 17 0.18 23 6.9 0.2 2 23 1066 1088 1065 1088 0.95 15 17 0.18 23 6.9 0.0 2 23 1107 1129 1106 1129 0.89 16 17 0.00023 0.029 16.0 0.3 1 23 1152 1174 1152 1174 0.98 17 17 0.00067 0.085 14.6 0.6 3 23 1182 1203 1180 1203 0.95
Sequence Information
- Coding Sequence
- ATGTCGGACACCATCCAACCACTGATAGTATGCATGGAAAACTACGATGGAGAGAAAGTATCTCTAAGAATTAACCCTACGGATAGTTTCcaaatatttttagataaagcCAAGACACTATTAGGCTACGATATTGATTTGGATTCAGTTACAAACAACCAACCGGTATCACTCGATGATAACATTTATAGATTTCTATTGAATATGGAAGATGACTCGCgcaataaagaggaagcaaatGCATCCAATTGCAATTGTAATGAACAAGAGTATAATACAGTGATGGATGACGGCACACAAATAGAAGCATCACAAATACAGTTTGATAATGAAGACACAATAATAGATTTGAGCGCTGTGAAAATtccatttattaaatatgtgaatgGATCCAGCGAAGATGAAACTAAGTTTTCAGAAAACTTTACGACTATAGACTATGCTATACCTGAAAGTCCGCAGTCAATACGTTCTTCTAGTCCCAAACCCGAATTTTCTTATAGTCTCCCATTTAAACTCTACTGCAATAACATTCCAGGTTTTGAAATACACTTCAACAAATACTTAGAACTAAGCATGAACACTTCTACTATATTCAACGCTATTAATAGTCAAAATAgcaaaaatgattttaaaataaattacgataCAAGAGTGAAAAGTCAAAACGAATTTATGTCTAGAGAAGAAATACTTAACATGTTTAAGGATTCTCCTGTAAAATCCCTTCCATACGATAAAAATAACCAGGAAAAGCGCAAGCATGTTAGAAAAACTGATCCACTGAGATTGGTAAACAAgaattccataaataaaatagaaagtGAACCAGACAAAAGTAACAAGGATTACGAATGTTGTATTTGTGATAAAATGATAAGCAATAAAATGGAGAAATCTTACATATTTGATAAAGAGGATCAAATGATACATCGATCAGAACAGAAAAAAACTGTGACGCATTTGAAAATGTTATGTACAAATTGTTTATGTAATCATTTTCAACCGAGTCTCATGAAAAGTCCAAGTCAATCTTTAAATAACGATGAATATTTGATAATCCAAAATAACcaacaatttatatttcaaaaGATCACaccaattgttttaaaaaagatAAGTGTTGATTTGAACACAATTATTAGTAATGGTAAAAATGAAGGGAATCTAAAAGTCCACCAGGAAAGTAATAAAGAAGTAACTTCGAGTTCTCAAGGCAATTCAGAAAGATCAGATGATGTTGTAATCGTTGAAGATACTGTGAACGAGTATTCTGATgatgttgaaattattgaaCCAGACTTAGACTATGACAACATTGATAATATAGAGGACGAAGTAGTTAAGGAGTttttaggaataaaaaaaaagtatgatgTGGACGATAAGGAACTAAAATGCAgATTTTGcgaaaaagtttttgaaaatattcCTCAAGTGACCGATCACGGAGAAGAACATAAACACGATTTAGACGATGGGCCCCTATATCCCTGTCCATTATGCGATTATGGGTATGCTAAAAATAAGTGGCTGAAATGTCATATAAAAGCGGCTCATGACAAAGTAGAAGTAAAAATTGAAGAACAAATTTCTATCAAAAAGGAAGTGGAGGACAAAGGTGAACTTTATTTGGCGAAGTCCTCACTGGTATTGATAACGGAGGTAAAGCAGGAGTGCTTGGATAGCAGTGACGAGGAGGCCATATGGATTGTTCAGGCGGAAGCCCAGGCCTCACAGGAGACTGGACAATCATCGGATAAAGTGCACTTCAAAACTGGAGAAAAATCTGACAAAATGCAAAAGTGTAAGAAGTGTCTGGAAATACATAGTTCGGCGGAGGCTCTAAAGGCTCACAAATGTAGAAAGCGAGGAAGAAAAAGAAAGACCACTACAAAGGTGGATTCTACAAAGAAACCTCGAAAAAAGAAAGGCAAAAGCTTAACGGATGCCCAGATAGTAACATGCGATAACTGTGACGAATCATTTGGTTCCAAAGTGAGGCTGAAATTTCACATgcAATTCCACGAGTCCACCGCCAGCGCCATGCTAACCGCGGACGGCGAGTACGTATGCGCCGAGTGCGATGGCGCGACGTTCCCGAGCGAGACGGAGCTATTCGACCACGTGCACTTCCAGCACGATAAGCAGAGGCGCTGGCAGTGCCCAATGGAGGGCTGCGGAAAGACTTTCTTTTTACGGGCTACGCTTACGAAGCACAGCCGCACGCACTCAGACACGCGCCGCTACGTGTGTGTCACATGCGGCAAGAGGTTCCTCGACAAACAAACGCTAGACGAGCACGGCGTCACACATCTTCAGATCAAGCCGTTCTCGTGCCATATCTGCCTGAAGCAGCTGACGCGGCGGTCGCGGCTGCGCATGCACCTGCGCACGCACGAGGAGGAGCCCGCGCCGCGCCTCGTGCTCGCCTGCGCCGTGTGCCATCGCGCCTTCGCCGGGCCCGCTGCAGCCACGGAGCACATAACAAGGTCGACCGAGTGCTTGGAAGTTTTCGCACTGGAACTAAAGAAGGACACCGAAACTGAATCACTGTCACCTACTACCGGCATTGTAACGCAGAATTCTGGAAATATTCCAGAAATTCTGAATCTCAGCGATCCAATAGAGCGCGAGGTGAACACGAGCGAGAGCACCGCGCTGCTAGCAACGGTAGACGACGTCGCGCGCCCGATCGTGCGCGTTGTCAACATAGAGAAGGCGTTCCGGTGCGAATATTGCGAGGAtGTTTTCTACATAGAGGATGCTTTGAACAAACACAGAATAATACATAAAGGAGTTAAAAATCCCTTCATCTGCCACATATGTAAAGTCAGTTTTGCGACGTATTCCAGATGTACCACCCACAAGACGACTCATGGGTTCTACAAGCGAAAAGAGAAAGACGGCGCGTCTAACGACGGCGGACCGAACGCTGGAATACTCGGCTACGGGGGATTCCCCGTCGCCAAACACTTTCTGTGCGAGGACTGCGGGCGCTCGTATCTGCACTGGACGTACCTGCAGGTGCACCGGCGCATGAAACACGACAACCAGCACGTGCTCTTCCAGTGCAACGACTGCCACTCCACCTTCCCCAATAGTTGGAGTGTGGCGTACCACAGGAAAAAAGTACACGGAAAAAGTGCTGGCGACGACGGAATAACCAAAATCAACAAAGAGGGCTTTGGAATACCGTGTCGTGACTGTGATCAACTGCTTCCGAATAAAAACGCACTTTACAAGCATAGGCTAAAGGAGCATTTCGACCAATCGTTCAGCGatatcAACACGATATTACTAGAGGAGAAACCAGTGACTTGCGGTAAATGTGGTCTGCAAGTTCAAACTTTAGGAGATTTGCAAAAACATCTCGGGGAGGTTCACGGAGAGGACCAACCAGCGTACTCGTGTGACGAGCAAACGCGCGCTCACGGTGCGGGCGAGCGCCGCTACCGCTGCGACCTTTGCGGCGTGTCGTTCCAAAGGGCCGCCACGATGCGCAATCACCGTCAGATCCACAGCGGTATGAAGATGTGGGCGTGCGAGCGCTGCCCGCGTCGCTTCCGCATGCGCGCTGAGCTTCGCACGCACCTGCGCCTCAAGCACCCCGCGCGCCTCGCCGTCATTGAGATTGAAGGGCTGAATCCACCCCCAGAACTTGTACTGAACTATCTGACGATGAATAATATTCAACAACAAAATGTTCTCGAGATCACAATGATTTCCTTTGCTAAGGGAACAACAAATATTGTACCTAATTCTGCCAGGGCCCTGTCTTTATTAAATGACGTGCCTCGAACACACATAGCACGAGAAGAATCTACGTTTCCACCACccgTACAACATTTCATGAGAATGgcCAGTAGAGGAACACGAATATTCTACTTGAACGATAAGGAAGTGGAGGAGTATCTCATGGCTGATAACAGCGATGATGAAGATGCCCTTATCTTGGATAAGGAAGACCAGGCGTTTATCCAAGGAGATATAGAAGCCGGTGTATCCGAAGTAATAATTGAGCCTGCTTCTGCATCAGACTTCAGTTCAGCTCCAGATCCAGCTCTAGGTTCATCGTCGTCTGACTCGCTTGATCCGCCGTTGAATAGCATAGTACCTATCTTCCAGTGGAAAAGGAACACCTACCGTCCTTACATTTTTTCTGACACTGATTACGAGTTTGGTAAGATAAATGTACTGCAGCAGTCAGTAGTCGCTAAAACCCATTGA
- Protein Sequence
- MSDTIQPLIVCMENYDGEKVSLRINPTDSFQIFLDKAKTLLGYDIDLDSVTNNQPVSLDDNIYRFLLNMEDDSRNKEEANASNCNCNEQEYNTVMDDGTQIEASQIQFDNEDTIIDLSAVKIPFIKYVNGSSEDETKFSENFTTIDYAIPESPQSIRSSSPKPEFSYSLPFKLYCNNIPGFEIHFNKYLELSMNTSTIFNAINSQNSKNDFKINYDTRVKSQNEFMSREEILNMFKDSPVKSLPYDKNNQEKRKHVRKTDPLRLVNKNSINKIESEPDKSNKDYECCICDKMISNKMEKSYIFDKEDQMIHRSEQKKTVTHLKMLCTNCLCNHFQPSLMKSPSQSLNNDEYLIIQNNQQFIFQKITPIVLKKISVDLNTIISNGKNEGNLKVHQESNKEVTSSSQGNSERSDDVVIVEDTVNEYSDDVEIIEPDLDYDNIDNIEDEVVKEFLGIKKKYDVDDKELKCRFCEKVFENIPQVTDHGEEHKHDLDDGPLYPCPLCDYGYAKNKWLKCHIKAAHDKVEVKIEEQISIKKEVEDKGELYLAKSSLVLITEVKQECLDSSDEEAIWIVQAEAQASQETGQSSDKVHFKTGEKSDKMQKCKKCLEIHSSAEALKAHKCRKRGRKRKTTTKVDSTKKPRKKKGKSLTDAQIVTCDNCDESFGSKVRLKFHMQFHESTASAMLTADGEYVCAECDGATFPSETELFDHVHFQHDKQRRWQCPMEGCGKTFFLRATLTKHSRTHSDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFSCHICLKQLTRRSRLRMHLRTHEEEPAPRLVLACAVCHRAFAGPAAATEHITRSTECLEVFALELKKDTETESLSPTTGIVTQNSGNIPEILNLSDPIEREVNTSESTALLATVDDVARPIVRVVNIEKAFRCEYCEDVFYIEDALNKHRIIHKGVKNPFICHICKVSFATYSRCTTHKTTHGFYKRKEKDGASNDGGPNAGILGYGGFPVAKHFLCEDCGRSYLHWTYLQVHRRMKHDNQHVLFQCNDCHSTFPNSWSVAYHRKKVHGKSAGDDGITKINKEGFGIPCRDCDQLLPNKNALYKHRLKEHFDQSFSDINTILLEEKPVTCGKCGLQVQTLGDLQKHLGEVHGEDQPAYSCDEQTRAHGAGERRYRCDLCGVSFQRAATMRNHRQIHSGMKMWACERCPRRFRMRAELRTHLRLKHPARLAVIEIEGLNPPPELVLNYLTMNNIQQQNVLEITMISFAKGTTNIVPNSARALSLLNDVPRTHIAREESTFPPPVQHFMRMASRGTRIFYLNDKEVEEYLMADNSDDEDALILDKEDQAFIQGDIEAGVSEVIIEPASASDFSSAPDPALGSSSSDSLDPPLNSIVPIFQWKRNTYRPYIFSDTDYEFGKINVLQQSVVAKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -