Pari037484.1
Basic Information
- Insect
- Phengaris arion
- Gene Symbol
- -
- Assembly
- GCA_963565745.1
- Location
- OY751452.1:4044714-4051583[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00013 0.016 16.8 4.1 1 23 61 83 61 83 0.97 2 20 1.6e-06 0.0002 22.8 4.3 1 23 89 111 89 111 0.98 3 20 0.00032 0.041 15.6 0.7 2 23 118 139 117 139 0.96 4 20 0.006 0.75 11.6 2.3 2 23 146 167 145 167 0.96 5 20 4.6e-05 0.0058 18.2 1.2 1 23 173 195 173 195 0.97 6 20 0.00046 0.058 15.1 2.1 1 23 326 349 326 349 0.97 7 20 0.0071 0.9 11.3 2.8 2 23 352 373 351 373 0.95 8 20 2.4e-07 3e-05 25.4 0.9 1 23 380 402 380 402 0.97 9 20 3.7e-06 0.00047 21.7 1.5 1 23 408 430 408 430 0.98 10 20 9.6e-07 0.00012 23.5 0.8 1 23 436 458 436 458 0.95 11 20 6e-06 0.00075 21.0 1.0 1 23 464 486 464 486 0.98 12 20 6.9e-05 0.0087 17.7 2.0 1 23 492 514 492 514 0.97 13 20 0.00058 0.074 14.8 0.4 1 23 520 542 520 542 0.97 14 20 0.023 3 9.7 6.9 1 23 548 570 548 570 0.97 15 20 2.8e-06 0.00035 22.1 1.5 1 23 576 598 576 598 0.98 16 20 9e-07 0.00011 23.6 1.6 1 23 604 626 604 626 0.99 17 20 0.00057 0.072 14.8 4.6 1 23 632 654 632 654 0.99 18 20 0.00022 0.028 16.1 0.4 1 23 660 682 660 682 0.96 19 20 3.2e-05 0.0041 18.7 1.4 1 23 687 709 687 709 0.98 20 20 0.0019 0.24 13.1 6.4 1 23 715 737 715 737 0.97
Sequence Information
- Coding Sequence
- ATGGAGAGAATCACTCCAGATTTTATAAAGGCAGAACCAGATTCTGAGGAAGATCCACAGCAAACCAATAATTTAGAGCAAGCAACTCCAGATAACGAAGATGAATATGAGTATAAGCTAGACAACTGCGGGTATCCACTCCCTGGTGCAAAGGAAACAAAACCACAGGAGGAAAGACGATATATATGTGATATTTGTGACAAGAGGTTCATACAGCTCTGTCATTTGAAAACTCATAAAATAATGCATACAGGTGACAAGCCATACTCCTGTGATATATGCCATCAGACGTTCACTCGGAGTACCAATTTAAAAAGACACAAGAACGTACATATCAACGGTCAGAAGATATACTGCGAGATATGTGACAAAAAATTCACATGGCTCAGTAATTTGAAGGAGCACAAGAAGTTGCATAGTAATATCAAACCTCTTCATTGTGATCTATGCGACGAAAGGTTCGCGGTGCCTCATTATTTGAAAATGCATAAGCTAAGGCATACGGGGGAGAAGCCATTCTGTTGTGATTTGTGTGGCCGAGCGTTTACTCTACGTATGACACTGATACGACATATACGAGGACATAAGGCGGGAGATAAACCTCTGGTACCACTATCCAGAGTGAAAGCTGGACTGTTTTCGCTGTATGATGATGTACCTGTcaagaaagaaaataatattgggGAGGAATGTGTATATGAAGATAGGGAAATTGAAGTTGAGCATATCCAAATCAAAACTGAACCAAGAGAAGATTCTTTTGATAATGAAGATTCGGAAGAGGAGTGTTATGgtaaACTTCAGCATATCAAGACTGAACCAGTAGATGAATCGTCTTCGAGCAATGCTAACGATAATAAACCGGAGCATATAAAAGTCAAAGTCGAGGTTGCAAGTGAAGATGACAATGAAACATCGACAGATCCAGAAAAAGTGGTGCCCAAAAAGTCGCGAAGAAAAACTGGCGATAAAGAGTATGCATGTGACATGTGCTGCAAGAAATTCAATCAGCCTGCGTATCTAAAGAAACATATTCAACGTATACACGACAAAAGGTGTGACATATGTAAGAAAAAGTTTAATACGCACGAACTTCTGGATGAACATAAGCTGTTGCATACAGACGAAGGGAAACCGTTTGTGTGTGAAGTCTGCACGAAGAGTTTTACCCGCAGTGATAGTTTGAAgaaacatatattattacacCAAATCAGCAAACCGTACTCGTGTGACGTATGTCAGAAAAGATTCACTCGACCCGATACGTTGAAAAGTCATAAACTATCTCACAACGATGGCAGAACATTCGTTTGTGATATTTGTAACAAAAAGTTTGCACGGAACAGTGATCTTAAGAAGCACAAAGTTATACATACAGGTGCCAAACCGTTTAGCTGCGACTTATGTGAAATGAAATTCACTCAAGCCGGCAACTTGAAGAAACACAGACTCACTCATAGTACTATTAAAGACTATGTATGCGACATATGCAACCGAAACTTTACATCTATTGGACATCTAAAATCGCATAAATCTTCACACACAGGCAACGAAATGTTCGCATGTGATATTTGCAATCTACCTTTCCTCACGATCAGCAACTTGAAGTCGCACAAGCGTACACATATAGTCGAGAAACAGCACTCCTGTGACTTTTGTAGTAAGAAGTTCCATGACCATGTAACGTTAGTCAGACATATAAAGCTACACAAAGGAGAACTAGCTTACAACTGCGATCTATGTGACAAGAAATTCGCGAAAAGCAGTTCTCTGATCAGTCACAAAAGGACACATACCGGAGAAACACCATACAGTTGTGAACTCTGCGAACGAAAATTCGTATATAGCAGCACATTGAATAACCATATGCGTACACATACAGGTGAGAAGCCGTACAGCTGCGACATATGTGGTGAAACATTCCTGCATTGTAGCTCCTTCAATGTGCACAGAAGAACACATACGGGTGAGAAACCATACAATTGTGACATATGTGGAAAAACTTATACGGCGTTGGGTAGTTTGAACACACATAAGTTTATACATTCGGGCAAACCGTATAGTTGTGATGTATGCGACAAGAAATTTTTAAGGCTCAGCAGCTTGAAGTCCCACCAGCTGACACATACGGGTGACAAACAGCACAGTTGTGAAGTTTGCAGTAGAACATACTACCAACTTCACAATTTGAACCGACATAAGCAAAAGCATGGACACTTTTTCAGTCCGCCGACCGTCAATATTGATACGGTGGAGATAAAAGTTGAAAAggaagatattattaattaa
- Protein Sequence
- MERITPDFIKAEPDSEEDPQQTNNLEQATPDNEDEYEYKLDNCGYPLPGAKETKPQEERRYICDICDKRFIQLCHLKTHKIMHTGDKPYSCDICHQTFTRSTNLKRHKNVHINGQKIYCEICDKKFTWLSNLKEHKKLHSNIKPLHCDLCDERFAVPHYLKMHKLRHTGEKPFCCDLCGRAFTLRMTLIRHIRGHKAGDKPLVPLSRVKAGLFSLYDDVPVKKENNIGEECVYEDREIEVEHIQIKTEPREDSFDNEDSEEECYGKLQHIKTEPVDESSSSNANDNKPEHIKVKVEVASEDDNETSTDPEKVVPKKSRRKTGDKEYACDMCCKKFNQPAYLKKHIQRIHDKRCDICKKKFNTHELLDEHKLLHTDEGKPFVCEVCTKSFTRSDSLKKHILLHQISKPYSCDVCQKRFTRPDTLKSHKLSHNDGRTFVCDICNKKFARNSDLKKHKVIHTGAKPFSCDLCEMKFTQAGNLKKHRLTHSTIKDYVCDICNRNFTSIGHLKSHKSSHTGNEMFACDICNLPFLTISNLKSHKRTHIVEKQHSCDFCSKKFHDHVTLVRHIKLHKGELAYNCDLCDKKFAKSSSLISHKRTHTGETPYSCELCERKFVYSSTLNNHMRTHTGEKPYSCDICGETFLHCSSFNVHRRTHTGEKPYNCDICGKTYTALGSLNTHKFIHSGKPYSCDVCDKKFLRLSSLKSHQLTHTGDKQHSCEVCSRTYYQLHNLNRHKQKHGHFFSPPTVNIDTVEIKVEKEDIIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00744958;
- 90% Identity
- -
- 80% Identity
- -