Basic Information

Insect: Phenacoccus solenopsis
Gene Symbol: ab
Assembly: GCA_009761765.1
Location: chr2:44473524-44485496[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.9e-05 0.0013 18.5 0.1 3 23 393 414 392 414 0.92

2 4 7.3e-06 0.00049 19.8 1.7 3 23 423 444 422 444 0.94

3 4 0.011 0.74 9.8 0.0 1 23 557 579 557 579 0.94

4 4 0.00043 0.029 14.2 0.6 2 23 586 610 585 610 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.9e-05	0.0013	18.5	0.1	3	23	393	414	392	414	0.92
2	4	7.3e-06	0.00049	19.8	1.7	3	23	423	444	422	444	0.94
3	4	0.011	0.74	9.8	0.0	1	23	557	579	557	579	0.94
4	4	0.00043	0.029	14.2	0.6	2	23	586	610	585	610	0.94

Sequence Information

Coding Sequence: ATGGGCGGTATCGGTCCGACCGGGTCTATTGGCGGTCCGGAACAACAGTACGCGTTAAAATGGAACGATTTTCACGCCAGCATATTGAATTCGTTTCGCCATTTGAGAGACGAAGAAGATTTCATTGATGTTACCATTGCCTGCGACGGGTTCTCATTTACAGCCCATAAAGTCGTGCTGTCCGCGTGCAGCCCGTATTTTCGTTCATTGCTCAAGAAAGGGGCTCAAGGGTGCCAGGTGAGGGTAATGTGTGCAAAGGTGGGTACACAATGGACACGCGGAGAGATCAAAGTAACCGTAGGTGATTTGGTTAAATGCTGGTCGCAGGCTAATCCGTGCCAACACCCTATTGTAATATTACGAGATGTGCGGAAACAAGATATGGAGGCGTTGCTTAGATTTATGTATAACGGCGAAGTGCACATAGGTCAGGAACAACTATCTGATTTTTTGAAGACTGCGCAAACATTGCAGGTTCGCGGCTTAGCGGATGTATCCACCAAAGATCAACATAAATTGACAAGCAATACCAGCACGTCGATACCCTGGTCATCGAATCTAACCGATGATGATAGCCAGTCGCTACATAATACGAAACATAATACTAGTGTAGATAATCCGCCGCCGTCCAAAAAACCACGTAATTCGGAACATCAGAATTCCAGGTATTCGGAATCGCCGCCTTTGAATAGGGACAACAGTTGCGATAATTTAGACGGTAAACCACCCATCTCGGATGCTCTGTTAACGCAAACGCTACACGAAGGATCGCAGTCGATTCCCAACTCTAATGCGTTGAAAACGGTATCCGAACCATCCTCACAAATACATTCGTCGAACGAAGATAGTAACTCATACGACGACGAAGCGAGCGACGCCGAAGGTACGGAGAATGGTCACAACAGCGTCACGGATTTAGCGCACCCAAAATTAGAACCGCCGGATTACTCGTTAGGCGATCGGTCTCGTAATGATTCCATAATGAGTCCGGCGCTATTCGATACGCAAAGACAGAGAAGCGGATACGGCAGCGGTTTGTTTAATATACAAGGCATTGCTGGCTTAATTCCGGGTCCTTCGGGGATGCATAATAATAGTCAAGATAGTTACGGAGGAAATGGCATTGGCGGTGGCAGCGGCGCTGGTTACGCTGGTATGGCGGAGCCGAAACCCATATGCAAGGAGTGCGGCCGCGTTTACAGCAGCATCAGCAACCTGAAGCAGCACGTGGCGAACGTACATTCGACGGCGCCGCAATGGGAGCCGTGTCCGATCTGCGGCAAGCATTTCAAAACGCGCCAGTACCTGTTCAACCATTTGCTGCAGACGCACGGCATTCGTCAGCGTGGCAATCGTATGCCGATGATGACGTTCGCGCCGCAACAACAGCATTCGTTACACATGAGCGTGACGCTGTCGCAAACGATGCCGACGACGACCACGTCGCGACATCAACCTGTCGGCTTCGCGCAGCAGATGATCGCGGCATCGTCCGGCCTGCCGCACTCGCCTATGGATAATGTGGACAGAGAACCCCACCAAGCCACTGCGTCCGTTTCGCATAAAGATCGAGATATGACCAGCACCATGGAGCAGTGTTTGCAGTATTTGTCTTCGGCCACCAATATCAGTGTCATTGGTAATAGTGGTGGAAGTGGTAATGGTCGGTATGATTGCCCGCTCTGTGGTACCGTATTCCTAGACGCAGCCACCGTTCGATCCCATCTAGAATTGCATTATCCGCGCGAAAGCTCCCAGTGCCCGGTACCATCGTGCGCCAAATCGTTCGCACATCCGAATTCGGTGCGTAATCATATGCGCATGAAACACGCCGCCGTTTGGGCCAAAATGAAGCAAATGAAGTCGCAATTGTACGATTATTATAACGTGGAAGAATTCTCGTGA
Protein Sequence: MGGIGPTGSIGGPEQQYALKWNDFHASILNSFRHLRDEEDFIDVTIACDGFSFTAHKVVLSACSPYFRSLLKKGAQGCQVRVMCAKVGTQWTRGEIKVTVGDLVKCWSQANPCQHPIVILRDVRKQDMEALLRFMYNGEVHIGQEQLSDFLKTAQTLQVRGLADVSTKDQHKLTSNTSTSIPWSSNLTDDDSQSLHNTKHNTSVDNPPPSKKPRNSEHQNSRYSESPPLNRDNSCDNLDGKPPISDALLTQTLHEGSQSIPNSNALKTVSEPSSQIHSSNEDSNSYDDEASDAEGTENGHNSVTDLAHPKLEPPDYSLGDRSRNDSIMSPALFDTQRQRSGYGSGLFNIQGIAGLIPGPSGMHNNSQDSYGGNGIGGGSGAGYAGMAEPKPICKECGRVYSSISNLKQHVANVHSTAPQWEPCPICGKHFKTRQYLFNHLLQTHGIRQRGNRMPMMTFAPQQQHSLHMSVTLSQTMPTTTTSRHQPVGFAQQMIAASSGLPHSPMDNVDREPHQATASVSHKDRDMTSTMEQCLQYLSSATNISVIGNSGGSGNGRYDCPLCGTVFLDAATVRSHLELHYPRESSQCPVPSCAKSFAHPNSVRNHMRMKHAAVWAKMKQMKSQLYDYYNVEEFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01177850;
90% Identity: iTF_01177850;
80% Identity: iTF_01177850;