Psol005534.1
Basic Information
- Insect
- Phenacoccus solenopsis
- Gene Symbol
- L
- Assembly
- GCA_009761765.1
- Location
- chr3:28414350-28443983[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00013 0.0089 15.9 1.2 1 20 102 121 102 123 0.91 2 23 0.0019 0.13 12.2 3.6 1 23 216 238 216 238 0.98 3 23 4e-06 0.00027 20.6 2.6 1 23 244 266 244 266 0.99 4 23 8.8e-05 0.0059 16.4 0.2 1 23 272 294 272 294 0.98 5 23 3.2e-06 0.00021 21.0 1.1 2 23 311 332 310 332 0.98 6 23 1 70 3.6 0.2 3 23 358 380 356 380 0.86 7 23 0.0002 0.013 15.3 1.0 1 23 428 451 428 451 0.97 8 23 1.9 1.3e+02 2.7 0.1 2 23 476 498 475 498 0.91 9 23 0.001 0.067 13.1 0.4 3 23 570 590 569 590 0.98 10 23 2.5e-05 0.0017 18.1 0.3 1 23 613 636 613 636 0.95 11 23 0.0034 0.23 11.4 0.2 1 23 641 664 641 664 0.92 12 23 6.3 4.2e+02 1.1 0.3 1 23 671 697 671 697 0.77 13 23 0.0032 0.22 11.5 0.9 2 23 717 738 716 738 0.96 14 23 0.00091 0.061 13.2 0.8 1 23 742 764 742 765 0.96 15 23 0.074 5 7.2 0.8 3 23 814 836 812 837 0.91 16 23 1.2 82 3.4 0.4 2 23 894 917 893 918 0.89 17 23 0.00042 0.028 14.3 4.4 2 23 930 951 929 951 0.96 18 23 0.41 27 4.9 0.4 1 23 961 983 961 983 0.95 19 23 1.6 1.1e+02 3.0 0.8 2 23 991 1012 990 1012 0.96 20 23 0.0069 0.46 10.5 0.2 1 23 1095 1118 1095 1118 0.96 21 23 0.089 6 7.0 0.9 1 23 1122 1144 1122 1144 0.97 22 23 0.53 36 4.5 0.2 1 23 1153 1175 1153 1175 0.95 23 23 0.0012 0.081 12.8 0.9 1 23 1259 1282 1259 1282 0.97
Sequence Information
- Coding Sequence
- ATGAAACCTGACAAGAATCGCAGTCCCGCCGGACCGGCGTATAAAGGATTTGGCGGAGTGCGTGCGTTGGCGGCGCGACGAAAATATATACATGAGCGTAGAGAAAAATACGAAAACGGAGGAAACGAAGGAAAAAGGGTTAATACGGTAAAAGCAGATACGCTGGGGACTGAAGGAGGTTCGTCTTGGGTCTCCGAGGACCACACCACATCTCCTGGAAGTTCGTGCCCGACGCCGAATTCCACCACGGAGGCTGCAGATTCCGAGTTATCGTTCACGGTCGGCGTTACCGATGGTACACCGCACGCTTGCCGTTTCTGCGATAAGGCATTCCCGCGCAATAGTTACCTCCGCAGACACGAACAGTATATGAAAATTTTGAAACTCGTATCAGAAAACGACTGGGACATTAGTACCGAACCTGAAATCAGGCACCATACAAATCCAAGATATCAATCTTTTCCAAAAACTCGATTCGATTTCAATCATACACGGTCGCTTAGACTCCATCTTGCCCAATCTCGAGCTCATAATTTTCGCGAGCCTTTCGTCATTCACGTCGACACGTTCGTAGAACCGGTCACCGGTATCGTCAGCGTGGAGTCATTGAATGAGGAAACTGTCACTCATACGGATTGTATGCCGTTCCAATGTGGATACTGTGGTACGTTATTCAAGCATAAGAGGAGTCGCGATCGTCATATAAAAATACATACAGGAGAGAAGAAGTATAAGTGCTCGAAATGCGACGCTGGATATACGAGAAGCGATCATTTGAAGATCCATTTGAAAACCCACGACAATCGTAAACCGTTCCAGTGCACGTTGTGCAATCGTGGATACGGAACGGCGGCAGCACTTACCTCGCATATGCAGAATCACAAACGTTCCAATGAAAACTCAACGCAGTCCACGCCTCCGGGTACCATTAAATGTCATAAGTGCTCCGAAGTGTTTCGTGAACCGGAGGAGTTACAGAATCATATGAACACTCATCAATCACCGGAAAATACGACCAGCTCAAATAACAAATCGTCGAAAAATAATTCGTTTCCGACGATTCGTCTCATTTGTACGTATTGTACCAAAGATAATTTCTCAACCATGGAAGCTCTACAATCGCACGTACAATCGGCCCACAAATCTATTTTCAACGGAGACCTGCAACGAGAATTATCAAACTCCAGGCAAAAATCGCCGGCACCTTCGCAAACATCTCAACCAAGCGTTAATTGTTCGTCGCCTCTAAATACATCGCAGTCTTTCAATTCATTACCGTCCTATTATTGCGACCTGTGCACGATGAGATTTTCGTCGCTCCAAGCGTTACAGAAACACACGAGCACCGTGCACGGTTTCTCGAGCAATACGTACAACAGCTTGAAATATTTAATGACGCCGGAGATGTTCAATAACGGGAAATTGTACTGCGTCTACTGCAATATGCAGTTTCTAACACCAGCCGCGTACGCCGAACATTATATCATATTCCATAGCCCTTATCATCCGCAGTTACTCGGATTAACGCCGCCCGAACAGATGAAGCCGACTGATTTATCCAAAAAGGTGTCGCCGGTGAAACGATCGACCGTCGATGAGCAAAGAGCGTCGCCTCGTAAGAAATCCAAAATCAACGAGAATTCGCCCGTTGGTAATTCTATGTTGAATTCGAATAACCATCGCTACGATTATCCCGGAACAGTATTGTGTAATCAATGTAACGCCGCTTTTACCGATTTCGAGTCGTTTCGTGCTCATATAAAACTTCATATCGAGGAAAGCGGAGGATTACTCGGAGGCGCGTCTCCGCTCGAACGTAAACCCACTAGTACGGAATATAGTTGCGAAAGTTGTCAGAAATCTTTTGAGAAGGCGGACGAGTTGCAGAAGCATTTGATGGAGGCGCATGCCCATCATTTATATAGTTGCTCAATTTGTAACGAAGTTTTCGATTCGAAGGTGACAATTCAGGTTCATTTTGCGGTTCGACATAGTAACGAAGCTAAAGTATACCGATGCACCGGCTGTCCCAGCTCCGCAATCGTATATCATTCTGAATTGGAATTCGCAACTCACGTAAAAACAATGCACACCAATAATTCAGCATTACTGACTACTTTTACCACCCATCATAATACTCAGATGTTACGATGTCTCATCTGCCACATGAGTTTCACTACAGAATTAGATATGCAGTTACATCTGGCTACGCATGGGAAAAAATTCCAATGCACATTATGTCCGCAATCTTTTCCTATAGAGTATTTGTTGGATAAACATATACAAAATCATCATAGTTCACCGCAAATGAACGGAACTCACGATGGGTGCATTGATTCCGCAATCAAAGAACCTTCGCCGTCTCGTTCGCCTAATAATCGTTTCGACAATCAACCAAAGAAAAACGGAAGTATCGAAAATAAAGGAAATTTTGTTAACTGTGATATTTGCGAAAAACGCGATTTCTCTAACGAATCTGAATTGATTGCGCACAAAAAGCTATTCCATCATAAGTTACTCTCTCCTGGAAAGCACGATAATTCGGAAAATTCGGAAGATCGTGTGAAATTATCTCAAAAACATAAATCCAACTCTTCGACGTCGTCTTCGCCTACGATCAGATTTGACAATAAAAAAATAGAGAATTTCAACGGCGAAGCTACCAGCGGTAATTCAACTAGTTGCGAAATCTGCGAAAAGAGAGATTTTGCCAGCGAAGCAGAACTGGCGTCGCATAAAAAATTAATACATCACGTCAAATTATCGTCTCCCGGAAAAGTGAGTTTACATTGCGCTTACTGCAACGAAAATTGTAAATCACGATCGGACCTGGAAAATCATATGAAGAGTCATTCGCAGAATTCATCTTCATCCGGTAAACACAAATGTATTATCTGTGATGAAATGTGTCCGACGGCTGCGGTGTTGGCTGAGCACAAATTAACTCACTGCAAGGTTCTTTCTGGTAAAACTTGTATGCAATGCAAAGGCTCGATAACGACCGAAGAGCAATTCTACTCGCATATTCAGCAACACAGCTCTTCTCAACCTGGTTCCAATAACAATACATCTTCACAGAATCAATTAATTTTACCGACCGTTTGCGTTATATGCAGACAAACCTTAGTGTCAGAAATGGAAGCACGGATGCACGCTAGATTCCACTTGCATCAATCAGCGGATTTAGTGCCGTGTTCAGTGTGTTTTCAAATGTCCGAAAGACAAGATTTGATCGCCGGTATCTGTAAAGAGTGCTACCAAAGACATGGCAAATCGTCGCCCTTCAGATGTCCTGAATGTCACATGAAATTTGATAATGGTACAGCAATCGAAATCCATTTGGCAACAGTTCACAGGAAAAGTTATCAATGCATTAAATGCCAGGTAAGCTTCGACAACGAAAAAGAAATCCAGCATCATGTTGCTACGCATTTGATGATCGACGGATTGAACGGTCATGAGTGTCGTCTGTGTCGATTGGTGCTGCCGACAACTTTACAACTTCAAGCCCATCTCATCGAGCACACATTTGCCGGCTGCGCAACGTTTACGTGTTATTTATGCAGTTCGATGCAAACAAAATTTTTCTTCACTTCCGAACTAGAACATCATAGTTACGTTCATTTGGAGGAATTAGCTCTTAGCGAAGGGCATAATTATTATTATGGTCCAGACAGAAACATCCACAAAGATAAAGCTAACATGCAATTTGTCAATCATTCCATCTCTATGGCTGAAAATTTATACAATAATAACAAAGAACCGAGCAATAAATATAACTGTTCTGATTGCGGAGTTGATTTCGCTCACGCCAATGATCTTTACGATCATAAAAATCGTTTCCATAGTGCCCTAAACGATAGATATGTTCAAAACGGTGAACATAAACGCAACAGGCAAACTCCTACTACCATGGAAACAAGTAGAGAAAAATTCGAAGAACAAAATAATAACGCAGAAGAAAAAAGTGACAAAAAACAAAATGACTGTGAATCTGAAGACGAGCAAATTGATGTGGTTACCACCAAAATCGAAGAACAATCAGAAAAAAAAGAAAACAATGATAATTGA
- Protein Sequence
- MKPDKNRSPAGPAYKGFGGVRALAARRKYIHERREKYENGGNEGKRVNTVKADTLGTEGGSSWVSEDHTTSPGSSCPTPNSTTEAADSELSFTVGVTDGTPHACRFCDKAFPRNSYLRRHEQYMKILKLVSENDWDISTEPEIRHHTNPRYQSFPKTRFDFNHTRSLRLHLAQSRAHNFREPFVIHVDTFVEPVTGIVSVESLNEETVTHTDCMPFQCGYCGTLFKHKRSRDRHIKIHTGEKKYKCSKCDAGYTRSDHLKIHLKTHDNRKPFQCTLCNRGYGTAAALTSHMQNHKRSNENSTQSTPPGTIKCHKCSEVFREPEELQNHMNTHQSPENTTSSNNKSSKNNSFPTIRLICTYCTKDNFSTMEALQSHVQSAHKSIFNGDLQRELSNSRQKSPAPSQTSQPSVNCSSPLNTSQSFNSLPSYYCDLCTMRFSSLQALQKHTSTVHGFSSNTYNSLKYLMTPEMFNNGKLYCVYCNMQFLTPAAYAEHYIIFHSPYHPQLLGLTPPEQMKPTDLSKKVSPVKRSTVDEQRASPRKKSKINENSPVGNSMLNSNNHRYDYPGTVLCNQCNAAFTDFESFRAHIKLHIEESGGLLGGASPLERKPTSTEYSCESCQKSFEKADELQKHLMEAHAHHLYSCSICNEVFDSKVTIQVHFAVRHSNEAKVYRCTGCPSSAIVYHSELEFATHVKTMHTNNSALLTTFTTHHNTQMLRCLICHMSFTTELDMQLHLATHGKKFQCTLCPQSFPIEYLLDKHIQNHHSSPQMNGTHDGCIDSAIKEPSPSRSPNNRFDNQPKKNGSIENKGNFVNCDICEKRDFSNESELIAHKKLFHHKLLSPGKHDNSENSEDRVKLSQKHKSNSSTSSSPTIRFDNKKIENFNGEATSGNSTSCEICEKRDFASEAELASHKKLIHHVKLSSPGKVSLHCAYCNENCKSRSDLENHMKSHSQNSSSSGKHKCIICDEMCPTAAVLAEHKLTHCKVLSGKTCMQCKGSITTEEQFYSHIQQHSSSQPGSNNNTSSQNQLILPTVCVICRQTLVSEMEARMHARFHLHQSADLVPCSVCFQMSERQDLIAGICKECYQRHGKSSPFRCPECHMKFDNGTAIEIHLATVHRKSYQCIKCQVSFDNEKEIQHHVATHLMIDGLNGHECRLCRLVLPTTLQLQAHLIEHTFAGCATFTCYLCSSMQTKFFFTSELEHHSYVHLEELALSEGHNYYYGPDRNIHKDKANMQFVNHSISMAENLYNNNKEPSNKYNCSDCGVDFAHANDLYDHKNRFHSALNDRYVQNGEHKRNRQTPTTMETSREKFEEQNNNAEEKSDKKQNDCESEDEQIDVVTTKIEEQSEKKENNDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -