Psol005430.1
Basic Information
- Insect
- Phenacoccus solenopsis
- Gene Symbol
- -
- Assembly
- GCA_009761765.1
- Location
- chr3:24835115-24838960[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0027 0.18 11.7 6.0 1 23 19 42 19 42 0.92 2 13 0.072 4.9 7.2 0.8 2 20 85 103 84 106 0.91 3 13 0.00019 0.013 15.4 0.5 2 23 111 133 110 133 0.96 4 13 1.1e-07 7.5e-06 25.5 0.7 2 23 140 161 139 161 0.97 5 13 0.00011 0.0073 16.1 2.9 1 23 167 189 167 189 0.98 6 13 3e-05 0.002 17.9 4.6 1 23 205 227 205 227 0.98 7 13 1.3e-05 0.00088 19.0 0.3 1 23 233 256 233 256 0.97 8 13 0.00097 0.065 13.1 5.6 3 23 273 294 272 294 0.97 9 13 0.00022 0.015 15.2 1.4 1 22 300 321 300 324 0.92 10 13 0.005 0.34 10.9 0.4 2 23 333 355 332 355 0.94 11 13 0.0095 0.64 10.0 0.1 2 23 360 381 359 381 0.93 12 13 1.5e-05 0.001 18.8 4.4 1 23 387 409 387 409 0.98 13 13 3e-05 0.002 17.9 7.4 1 23 415 437 415 437 0.97
Sequence Information
- Coding Sequence
- ATGAAGAATCCACCCCACAAACAGAAGATGCTCCGAATCCTAACGGATAGACCTCATATTTGCCCTCTTTGTGGTACGAGATTCAAACGCAAAGACCATTTAGACTGCCACATAAAGTACACTCATGGCGATGAAAAGTATCCTAAAAGACCTTGTGTCAAAAAAGGAACTACCTATAAGGCAGCTAAGCGGGAACGTTTGTGTATTCACTGTGTTATTCGTAATCATCAGATGTGTTCCACTTTCTTCAAGTCGTGCGAAATATGTGGTTTGGACTTTCGGTACGAAACGTTTTATTTACGGCATAAATGGAAGCATCCGGAAACCGTATATTGTGATAAATGTCAAATTAAATTTGAAAATAATGAGTTATTTAGACAACACATCGAAACTATGCATGAAGAAAAAAAATTGTTGCAGTGTGATACCTGTGGAAAGAAATTCCGTACCAAAGCTAGTTTGAAAATTCACGTCCGTGTTCATACTGGTGAAAGACCATACCAATGTCAATATTGTTCTTGGAGGTTTCATAAGAAAGGCCAGCTTGTAGTTCATATTTATCGTCATACCGGCGAAAAACCTTATACTTGTAGTATTTGTGTCGTTCGCCTCTACCAATGTAACATTTGCAAATGCACGGTCAAAACATCGTACGATTTTAAAAAACATATGATCAGCCATAAAACAACCAACAGCTACACGTGTAACATTTGCGGGACTTCTTTCACGTTGAAAAAGGTCATGGAGGCGCATATACGAAATGAACATTCGACGAGAAGAAGAACAAAGAAACCCGATTCGGAAAATGATAAACTTTGTTTTCAATGTAATAAAAATTTCACATCCAAACCTTCGCTTCATGTTCACATGCATACTAAACATTGGGACGGTGAATTTTACGTATGCGACATTTGCGAAACGACTTTCAGCGAAATGCACGATTACAAAAAACACATCAAGGAGAATAATCATAGCACCCAAGGACCAACGCCTAAACAATGCTCTGTTTGCGGGTTAGACTTCGACAGTCGAATTCGTCTCAAAACTCATACAGCTGTTAAACATGGACAAGGTTTGAAATGTAGTATTTGTGGAGAGGTTCTTCAGACTTATCAAGAGTTTCAAAATCACGAAGCATTACATCCGCAACTTAGACCCCACAAGTGTGAATTTTGCGGCAAGAATTTTAAACGTATTACCGATTATAAAAAACATCAAATGATTCACACTGGAGAGCGACCTCATATTTGTGAAGTGTGCGGTAAAAGCTTCAATAGAAAGCATAACATGCATATGCACAGGAGGTCGCATTTTAATGAAAAACCGCAC
- Protein Sequence
- MKNPPHKQKMLRILTDRPHICPLCGTRFKRKDHLDCHIKYTHGDEKYPKRPCVKKGTTYKAAKRERLCIHCVIRNHQMCSTFFKSCEICGLDFRYETFYLRHKWKHPETVYCDKCQIKFENNELFRQHIETMHEEKKLLQCDTCGKKFRTKASLKIHVRVHTGERPYQCQYCSWRFHKKGQLVVHIYRHTGEKPYTCSICVVRLYQCNICKCTVKTSYDFKKHMISHKTTNSYTCNICGTSFTLKKVMEAHIRNEHSTRRRTKKPDSENDKLCFQCNKNFTSKPSLHVHMHTKHWDGEFYVCDICETTFSEMHDYKKHIKENNHSTQGPTPKQCSVCGLDFDSRIRLKTHTAVKHGQGLKCSICGEVLQTYQEFQNHEALHPQLRPHKCEFCGKNFKRITDYKKHQMIHTGERPHICEVCGKSFNRKHNMHMHRRSHFNEKPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -