Psol003265.1
Basic Information
- Insect
- Phenacoccus solenopsis
- Gene Symbol
- -
- Assembly
- GCA_009761765.1
- Location
- chr2:25817918-25822207[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.1 4.8e+02 1.0 0.1 1 20 9 31 9 35 0.63 2 12 0.00011 0.0073 16.1 0.2 1 23 40 62 40 62 0.96 3 12 0.0004 0.027 14.3 4.6 1 23 70 92 70 92 0.98 4 12 2e-05 0.0014 18.4 0.3 1 23 99 121 99 121 0.97 5 12 6.5e-07 4.4e-05 23.1 4.9 1 23 127 149 127 149 0.98 6 12 0.0013 0.086 12.8 1.1 1 23 156 178 156 178 0.94 7 12 6.8e-06 0.00046 19.9 1.1 1 19 184 202 184 206 0.93 8 12 8.4e-06 0.00057 19.6 0.4 1 23 212 234 212 234 0.98 9 12 0.0075 0.5 10.3 0.3 1 23 240 262 240 262 0.92 10 12 0.00016 0.011 15.6 2.2 1 23 268 290 268 290 0.98 11 12 4.6e-06 0.00031 20.5 0.3 1 23 296 318 296 318 0.97 12 12 0.00012 0.008 16.0 0.1 1 23 324 348 324 348 0.94
Sequence Information
- Coding Sequence
- GTGGTGAGTCGAGAAGGTGATACATATACCTGTTTGATATGTAACGTCGAGAATAAATTTAGTGCTGATGCGCGTGGAATTACATCTCACGTGAAAGAAAAACACGAAATACGCCTTTATATTTGTGACGTTTGTGGAGTTGAGTTTTTCAAAAGAAGTGAACTCTCTAAGCATTTGGATGAACATATAACCAACGAAGATGATACGTTTGAATGTGACGTATGCCACAGAACATTTAATAATTTCAGACTTTACAGAGTACACAAAAAAATGCATAATTCTTCCCAAAAAAATTATACTTGCGAATTATGTGGCAAACGATTTGGGTCTCGAAATTTATTGGAAGAACATAACAACGTGCATACTGGACAACGACCTTATTGCTGTTCAGTTTGTGGTAAGAGTTTCACTTCGAAGTATACTCTGAAATCACACGAAAAGACTCACGAAGACAGACCTCGTCCATTTTCATGCATTAATTGCGGTAAAGCTTTTCTCACGCAGCAAAATTTGATTCACCACGAACGTATACATTCCGGTATCAAAAATTATATATGTCAGGAGTGTGGAAAATCATTCAATACGGCTCGTAATTTGGAAACTCACTGCGTTATTCATACCGGTTATAAACCATTCATTTGCCGCCTTTGTGGTAAAGCTTTTAGTCGTAAACCTGAAATCAGAGATCACGAACGCACTCACACAGGAGAGAAACCCTATCAGTGCGAATTCTGTGGCGCGTCATTCGGAAGGCGTCTCTTGGATTATCACATGAAAGCAGCGCATACGGGAGAACGACCATATAAATGTACCATTTGCTTGGCTACTTTCATTTATCCGGAACATTTCAAAAAGCATAAGCTGATTCATACCGGAGAAAAACCTTACGAATGCGAAGTTTGCGGAAAAGCTTTCAACAGTCGGGATAACAGAAATGCTCATCGTTTCGTACACAGTGACAAAAAACCGTACGAATGTTTGGTATGTGGTTTAGGTTTCATGCGTAAGCCATTGCTCTATAATCACATGAATACTGCCGGCCATCAGAACGACACAATTGTCGTGAATCAACCGCGATTAACGGCCGACGATGTTATTACTAATATCAGCACCACTACGACGGCTACTCCTTTGCAGCCGCAGTTAGAAATGACCATTATTACGGACGAAGAAGGAAATCAAAAACTCACTCAAGAAGTAGGCGCCGATCAGAAATTGTTTATTCACGAAATGAAGGAGCATATATTAATACCCGACGACCAAAACGCCAATCAGCAGCATAATCTGCATATTGTGATGGATGGACAAGTGGAG
- Protein Sequence
- VVSREGDTYTCLICNVENKFSADARGITSHVKEKHEIRLYICDVCGVEFFKRSELSKHLDEHITNEDDTFECDVCHRTFNNFRLYRVHKKMHNSSQKNYTCELCGKRFGSRNLLEEHNNVHTGQRPYCCSVCGKSFTSKYTLKSHEKTHEDRPRPFSCINCGKAFLTQQNLIHHERIHSGIKNYICQECGKSFNTARNLETHCVIHTGYKPFICRLCGKAFSRKPEIRDHERTHTGEKPYQCEFCGASFGRRLLDYHMKAAHTGERPYKCTICLATFIYPEHFKKHKLIHTGEKPYECEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGLGFMRKPLLYNHMNTAGHQNDTIVVNQPRLTADDVITNISTTTTATPLQPQLEMTIITDEEGNQKLTQEVGADQKLFIHEMKEHILIPDDQNANQQHNLHIVMDGQVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -