Psol001586.1
Basic Information
- Insect
- Phenacoccus solenopsis
- Gene Symbol
- -
- Assembly
- GCA_009761765.1
- Location
- chr1:40869727-40878506[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.64 43 4.3 2.4 1 11 239 249 239 252 0.95 2 22 0.00056 0.038 13.9 1.3 2 23 270 292 269 292 0.96 3 22 0.0022 0.15 12.0 7.7 1 23 297 319 297 319 0.97 4 22 7.7e-05 0.0052 16.6 3.1 1 23 325 347 325 347 0.98 5 22 0.00016 0.011 15.6 2.0 1 23 359 381 359 381 0.98 6 22 0.0009 0.06 13.2 2.4 2 22 391 411 387 411 0.93 7 22 0.55 37 4.5 0.6 1 23 418 440 418 440 0.84 8 22 5.9e-06 0.0004 20.1 2.9 2 23 447 468 446 468 0.97 9 22 1e-06 6.9e-05 22.5 2.4 1 23 474 496 474 496 0.99 10 22 0.053 3.5 7.7 1.5 1 23 502 524 502 524 0.95 11 22 2.4e-05 0.0016 18.2 0.6 1 23 626 648 626 648 0.97 12 22 0.00012 0.0083 16.0 3.2 1 23 654 676 654 676 0.96 13 22 0.0026 0.17 11.8 1.8 3 23 734 754 732 754 0.94 14 22 0.024 1.6 8.8 3.6 1 23 848 871 848 871 0.96 15 22 0.037 2.5 8.2 6.2 1 23 878 900 878 900 0.98 16 22 0.017 1.1 9.2 0.4 3 23 908 929 906 929 0.92 17 22 0.00047 0.032 14.1 0.6 1 23 934 956 934 956 0.98 18 22 8.6e-06 0.00058 19.6 1.3 1 23 962 985 962 985 0.97 19 22 1.3e-05 0.00085 19.1 2.7 2 23 993 1014 993 1014 0.98 20 22 0.0012 0.08 12.9 2.1 2 23 1021 1042 1020 1042 0.96 21 22 1.1e-06 7.1e-05 22.5 3.5 1 23 1048 1070 1048 1070 0.99 22 22 0.00039 0.026 14.4 1.3 1 21 1076 1096 1076 1097 0.95
Sequence Information
- Coding Sequence
- ATGTTACCATCTGAATTAGTCGGAGTGTGCCGGCTATGTTCTTCGAAAGAACACGTAAATATAAGTATTTTTGAAAACGGTTCCAAAGAAACACATTACAAGATTTCTACCTGTCTTCCCATCACTATCTCATCCGATGATAAATTACCTAAAAGAATATGTGTGAATTGCTTCAACAAAGTAAATATGTTCTATGATTTTTGGAACCAAACTTTAGAAACTGAAAAGCTCTTACTTTCATGGCTAAATGCCGAAACTGAAACTTTCAATAATTTCCACAAAAATTCTCAACAGTATTCATATCCTAGTATTAATGAGAACCTCGACGATGACGACAATACCACTAATCACGATATTGGAGGTGATAGCGATGAAAATCACAACGAAAGTGACATTGAAAGTAATACTGAAAAGTCAATCAATGAACAAAATGTGAACAAGTATAACGAATTAAGTGTGCCAAAAAGTAATCAAATTCTAAGTGTAGACTATCAAGACGAAAAACCGGGTCCATCTGGTTTTCAAGAGGAACAGTCTTCTGCACTAAAACAGTTGCAAGGATATACAGACGAATTAACCAACAACTCTCTTAGTAATTTATCGAAAATATTTCAAGTATTAAATAGTCCAGAAGATGTGACAGAAAGTACGCTACCTTTACCAGTAAATGAAAAACATCCTAATTCAGCGGAAACACCCGAAGTAGATTCTCCTTATCGGTGCGAATCCTGCGATAAATCATTTTCTTGCGAGGATATTCTAGCCATGCACAAACTAAGCCAATGTAACGATCAGTGTGAAGAAAAAAAATGCTATCTATGCGACGAAACGTTTAGTAATACGATAAAATTATCTCAGCATATGAAAAATATCCACGACGATCGCAAATTCCAATGCGAAGAGTGCGGTAAATGTTTCCTAACCAAGCATCATTTACGAATGCATAGCTCTATGCATTTGGACTCGAAACCATTCTCTTGCCAAAAATGTGGTACTAATTTTCGATACAAAAAAACCTACGAAACTCATATAAAAATTCACGCCAACGAAAAAAAATCGTCGGACGAACAAACCTTCGTTTGCGATGTTTGCGAACAACGTTTTTCTACGCGAAATTCGTACATTCATCACGCTCGCAGTCATAAAAACGTAGCGAGTAAATGTAAACTCATGTGTTTCGTTTGTAATCAAACGTTCGCATCCAAACGAATGCTAACTCAGCATTTACGTACGCAATGTGGTGAGAAAACCTATGCGTGCGATATTTGTGGCAAGGAGTTACTTACTAAAGAATCGTTAGAGTGTCACAAATTGATCCACGTTGATGAGAAGTCGCTGGTGTGTAAAACTTGTGGAAAGACTTTTTCTCATCGTAAGTATTTCGTCGTCCATCAACGTATACATACCGGTGAGAGACCCTATAAATGTGTTACTTGTAATAAGACATTCACGCAAGCTTCCACTTTGACCGTGCATCGACGTTATCATACTGGTGAAAGACCATATAAATGTTTCGTTTGTTCTAAAGGCTTCGTCACTCGTACAATTATGTTGTCTCATTTGAAATATCATAAAGAATCATTAGACGAAGAATTAATTTATCTGTACGTTGAATCGGAAGAGCAAATCGAAAACGAAAGGCTTTCTTCCTTCAAAAAGTATCAAGAGACTTCACAAAACGAAATTAATACAGCGATTAATCGTAATTTATCCCTCGAAGTAGAGAAATCGCTCGCTAATATGGATTCCGATAAATCGAATATCGAGCAAACAAACACCTATTTTGTAGAATTCCCAAATAACGATAGATCAGTTGAAAAATCAAAACTAACGAAAAAACGTCCTTTGAATGTGGAAAAATCATCAACGATTTTATATTCGTGTCCTGTTTGCGACGCCTCATTTTCAACCAAAGTAGACTACCATCGACACGAACTCGTTCATTTTACAGACTACCCATATGAATGTGGTCTTTGCGGTAAACGTTTCAAAAGATATAAACAGTTTGAAAATCATAAAACCTATCATCGTTTGGACGACTGGTTTGATGAAAATGATGAAGAAGAAACAAATATCACCGAAATAGAAGAGTGTGATTACATCAGCGTGGAAAAACAAGTTGAAAAAACTTCCAACACTGATATTCCACAGTTAAGCAGAAAACGTTCTTTCAAGCAGAGTGAGAATTACAAAAAATGTTGTGAAATTTGTGGCAAAACATTTAGTAACGAAATTTTATGTAAGATTCACGCCCGTAAGCACGACGGCGAGGATATTTACGTATGCGAATCGTGCGGTCAGCAGTCAAAAGCAAGTACCGACTCGATAGTAAAAATTGAAAAAAAAGCCCACTACGAAATCAAACAAAACGACGGAGAAGAGCTAACAGAGGGCGATGATTCGAGGAAAATAAAAAAATTAAAACTCAAATTAAAAAGTCCTTCAAAGCCCAACCAAACTGTTGGAAACCACGTGACCAAGATAAATGGTAAAAAATCCAAGAAAAAGGTGAAAATTAAACGGAAATCTGAAGAAGCCGTCTTTAAATGCAGACACTGCGATGAAGGATTTGATACATCCACTAAACGTAGCAAACACGAGAAGAGCATACACATGAAACAAAGCATCATGTATAATTGCGACAAATGCAGTTATAGTACGTACACTAAAGGCTGTTTCACCACCCACCTAAAAAGACACATTAAACAATACACATTATTTTGTGAAGAATGTAACGTTGGTTTTTTCAACAACACCGAGCTCACGTCGCACAATATCAAATTACACGATATGCAACCCTTCCAATGCGCCATCTGCAACGATCTATTTACGTCGAAAGGTAACCTATATAGTCATATAAAAAGCCACGATCCGAATAATTCGTACGTTTGCGAAGTATGCGGAAGAACTTACAAAAAGAAAAACAGTTATAAAAGACACATAGCAAGATCCCATCTTGGATTAACTACGAAAGCTCAGTGCTCGGTTTGCCAGCGAGTATTAAGTTCGAAGGAGCATTTAAGAAGACATATGTTAACGCATACCGATGAACGTAACTGGGTGTGCTCAACTTGCGGTAAATGCTTTCTTAGTAAGACTTATTTAACCGAACACTCGAGGATACATTTAGGTATTCGACCTTATAAGTGCGAAATATGCGAAAAATGCTTCACTCAACGTGGCTCCCTTACTATTCACAAACGCTCGCATACTGGAGAGCGGCCCTATAGGTGTCAGTATTGTAATAAAGGTTTTGTTATGTCCACATTACTCAGATACCATTTGAAGAAATGCAACGAAGCTAAAGTAGGTGCACAAGTTTTTACACAATCAGTCATTAGTTCAGCACCTGCGGCTCATATAAATTTTAATATACCGAAAGAAGAGGGTGTATCATCGATCATTTGTAATAACAATATGATTGAAACGTCGACTCATTTGGAACCTCTTAATAATTGCATGGTTATTCATTGCACAAAATGA
- Protein Sequence
- MLPSELVGVCRLCSSKEHVNISIFENGSKETHYKISTCLPITISSDDKLPKRICVNCFNKVNMFYDFWNQTLETEKLLLSWLNAETETFNNFHKNSQQYSYPSINENLDDDDNTTNHDIGGDSDENHNESDIESNTEKSINEQNVNKYNELSVPKSNQILSVDYQDEKPGPSGFQEEQSSALKQLQGYTDELTNNSLSNLSKIFQVLNSPEDVTESTLPLPVNEKHPNSAETPEVDSPYRCESCDKSFSCEDILAMHKLSQCNDQCEEKKCYLCDETFSNTIKLSQHMKNIHDDRKFQCEECGKCFLTKHHLRMHSSMHLDSKPFSCQKCGTNFRYKKTYETHIKIHANEKKSSDEQTFVCDVCEQRFSTRNSYIHHARSHKNVASKCKLMCFVCNQTFASKRMLTQHLRTQCGEKTYACDICGKELLTKESLECHKLIHVDEKSLVCKTCGKTFSHRKYFVVHQRIHTGERPYKCVTCNKTFTQASTLTVHRRYHTGERPYKCFVCSKGFVTRTIMLSHLKYHKESLDEELIYLYVESEEQIENERLSSFKKYQETSQNEINTAINRNLSLEVEKSLANMDSDKSNIEQTNTYFVEFPNNDRSVEKSKLTKKRPLNVEKSSTILYSCPVCDASFSTKVDYHRHELVHFTDYPYECGLCGKRFKRYKQFENHKTYHRLDDWFDENDEEETNITEIEECDYISVEKQVEKTSNTDIPQLSRKRSFKQSENYKKCCEICGKTFSNEILCKIHARKHDGEDIYVCESCGQQSKASTDSIVKIEKKAHYEIKQNDGEELTEGDDSRKIKKLKLKLKSPSKPNQTVGNHVTKINGKKSKKKVKIKRKSEEAVFKCRHCDEGFDTSTKRSKHEKSIHMKQSIMYNCDKCSYSTYTKGCFTTHLKRHIKQYTLFCEECNVGFFNNTELTSHNIKLHDMQPFQCAICNDLFTSKGNLYSHIKSHDPNNSYVCEVCGRTYKKKNSYKRHIARSHLGLTTKAQCSVCQRVLSSKEHLRRHMLTHTDERNWVCSTCGKCFLSKTYLTEHSRIHLGIRPYKCEICEKCFTQRGSLTIHKRSHTGERPYRCQYCNKGFVMSTLLRYHLKKCNEAKVGAQVFTQSVISSAPAAHINFNIPKEEGVSSIICNNNMIETSTHLEPLNNCMVIHCTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -