Basic Information

Insect: Phenacoccus solenopsis
Gene Symbol: -
Assembly: GCA_009761765.1
Location: chr4:3490875-3494678[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0018 0.12 12.3 3.4 1 19 91 109 91 114 0.89

2 18 0.36 24 5.1 0.4 2 23 122 144 121 144 0.78

3 18 1.9e-05 0.0013 18.5 1.4 1 23 149 171 149 171 0.98

4 18 6.5e-07 4.3e-05 23.1 0.3 1 23 175 197 175 197 0.98

5 18 2.6e-05 0.0017 18.1 0.6 1 23 203 225 203 225 0.99

6 18 0.0046 0.31 11.0 0.2 1 23 231 253 231 253 0.94

7 18 1.5e-05 0.001 18.8 2.6 1 23 259 281 259 281 0.98

8 18 5.4e-07 3.6e-05 23.4 1.9 1 23 287 309 287 309 0.98

9 18 4.6e-06 0.00031 20.4 0.5 1 21 315 335 315 336 0.94

10 18 3.3e-05 0.0022 17.7 0.9 1 19 358 376 358 381 0.93

11 18 0.11 7.6 6.6 0.2 3 23 390 411 388 411 0.94

12 18 1.3e-05 0.00087 19.0 0.8 1 23 416 438 416 438 0.97

13 18 5.9e-06 0.0004 20.1 5.9 1 23 442 464 442 464 0.97

14 18 5.4e-07 3.6e-05 23.4 3.2 1 23 470 492 470 492 0.98

15 18 0.026 1.8 8.6 1.3 1 23 498 521 498 521 0.95

16 18 2e-05 0.0013 18.5 1.0 2 23 528 550 527 550 0.96

17 18 0.0074 0.5 10.4 5.3 1 23 556 578 556 578 0.98

18 18 6.2e-07 4.2e-05 23.2 0.3 1 23 584 606 584 606 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0018	0.12	12.3	3.4	1	19	91	109	91	114	0.89
2	18	0.36	24	5.1	0.4	2	23	122	144	121	144	0.78
3	18	1.9e-05	0.0013	18.5	1.4	1	23	149	171	149	171	0.98
4	18	6.5e-07	4.3e-05	23.1	0.3	1	23	175	197	175	197	0.98
5	18	2.6e-05	0.0017	18.1	0.6	1	23	203	225	203	225	0.99
6	18	0.0046	0.31	11.0	0.2	1	23	231	253	231	253	0.94
7	18	1.5e-05	0.001	18.8	2.6	1	23	259	281	259	281	0.98
8	18	5.4e-07	3.6e-05	23.4	1.9	1	23	287	309	287	309	0.98
9	18	4.6e-06	0.00031	20.4	0.5	1	21	315	335	315	336	0.94
10	18	3.3e-05	0.0022	17.7	0.9	1	19	358	376	358	381	0.93
11	18	0.11	7.6	6.6	0.2	3	23	390	411	388	411	0.94
12	18	1.3e-05	0.00087	19.0	0.8	1	23	416	438	416	438	0.97
13	18	5.9e-06	0.0004	20.1	5.9	1	23	442	464	442	464	0.97
14	18	5.4e-07	3.6e-05	23.4	3.2	1	23	470	492	470	492	0.98
15	18	0.026	1.8	8.6	1.3	1	23	498	521	498	521	0.95
16	18	2e-05	0.0013	18.5	1.0	2	23	528	550	527	550	0.96
17	18	0.0074	0.5	10.4	5.3	1	23	556	578	556	578	0.98
18	18	6.2e-07	4.2e-05	23.2	0.3	1	23	584	606	584	606	0.98

Sequence Information

Coding Sequence: TATTTGCAACGTCTGCAAGTAAAAGAGGAATCAGCGGATGAAGAAGATTTCGACAATGTAGAAAACGACGACTCATACGATTCGGATGATCATATACTCGTAAATTTATTGCTATCCGACGAAGACGACTCGGTAAAAAATAGGAACAACGGAGACCAAAAAACTACGGAAAAAAACACCAAAAAAACTACTCGTTCTAAAAAAGTCAAAAGTAAACAAGAACGAAGAGCTTTGTATCGCCAAAAATACAACCAATACCAACGTAAAACCTACCCTTGCGATTTATGCGATAAAAAATTCACAAGATTTTGCGATTTATTCAACCACGATAAAATGGATCACGAGAATGTTCCGCGTAACAGTATGTGCAATGTTTGTGGCAAGCTATTTGTATCCGATAATCGTGTCTCCATTCATAAAAGTCGTTATCACTGCGAGAAACCGTTTACCTGCGATATCTGCGAAAAGAAATTTCTCACTAAGCGTACCCTGCAGAAACACATGATTATACATAATAAATGTTTCACGTGTCCGTATTGTAATCTATCGACGTCGTCTAATTCTAGTTTAATCGAACACATACGCGTACATACGCGTGAAAAACCTTACACTTGCGACGAATGCGGCAATTCTTATATATCGCAGCAAGGATTAAATTCGCACAAAAAAACACATTCGTCCGAGAAGCTGTTCATGTGTGATATATGCGGTTACTCAGCCAGAAATCAAAGTTCTATATATATTCACAAAGGATCTCATAGTAATGTTAAACCGTTCATTTGTGAAACTTGCGGTAAAGCTTTTAAAAGTAAAATTCGCTTAAACGAGCACCACCGTAGGCATACGGCGGTTAAAAGGTTCACATGCGATACATGCAATATTAGCTTTAGGCAGAATTATCAGTTGATTAAACATTACAGAGTACATTCGGGTGAGAAACCGTATACCTGCGATATATGTAGTAAAAGTTTCGCCAGAAGCGATAGTCTTAAAGAGCATAAACAACAGGACGAAATAGCAGAATCATGTAGTAAAATGAAAAAATTCAGTACTTACTACAGGCCGCAATTCTACCCTTGCGAAATTTGCGGTAAAAAGTTCACACGTGCTTGCGATTTGCTCAATCACGACGACACAGATCACGTGAACATACTGCGAGTGTCGAACTGCGACATATGCGGTAAACTGGTGATCTCTGAGGATCGATTGTTACTGCATAAACAGAAATTCCATACTGCCAAACCATACCCGTGTACGGTTTGTCAAAAAAAATTCGTTTCGTATAAATCGTTGATTCGTCATTACGACGTGCATTGTCAGCAATTCTTTTGTGATTATTGCCAAAAATGTTTTCGTTCGAAGACTACTTTGAAAGCGCATATTAAGAATCATTTATTCAAACAGTCGTTCGTTTGTAACCTTTGCGGTAAAAATTTCTCTAGTAAGACCGGCTTGCATACTCATCAACGGACGCATTCTTTGGTGAAGTTGTTTAAATGCGATAAATGCGGTTTCGCTGCTAAACATCAAAGCGGTATTTATATTCATACGTTGAGTAGACATAACGTGGCTGAATCTATAGTGTGCGAATTATGCGGTAGATCGTTTAAGAATAAGATGCGTTTGAACGAACATCTGAAAAGAAAACATGAAACACCGAAACGTTACGCTTGTGATAAGTGCGATAATCGTTTCAAACAGATGTACCAACTGAGGTGTCATTATCGCACTCATACTGGAGAGAAACCTTATATTTGTGAAATGTGTGGTCGAGGCTTTACTCGCAGTGATGGACTGAAGGAGCACAAACGTGTACACGCGCTCAAGTACGATTTGACG
Protein Sequence: YLQRLQVKEESADEEDFDNVENDDSYDSDDHILVNLLLSDEDDSVKNRNNGDQKTTEKNTKKTTRSKKVKSKQERRALYRQKYNQYQRKTYPCDLCDKKFTRFCDLFNHDKMDHENVPRNSMCNVCGKLFVSDNRVSIHKSRYHCEKPFTCDICEKKFLTKRTLQKHMIIHNKCFTCPYCNLSTSSNSSLIEHIRVHTREKPYTCDECGNSYISQQGLNSHKKTHSSEKLFMCDICGYSARNQSSIYIHKGSHSNVKPFICETCGKAFKSKIRLNEHHRRHTAVKRFTCDTCNISFRQNYQLIKHYRVHSGEKPYTCDICSKSFARSDSLKEHKQQDEIAESCSKMKKFSTYYRPQFYPCEICGKKFTRACDLLNHDDTDHVNILRVSNCDICGKLVISEDRLLLHKQKFHTAKPYPCTVCQKKFVSYKSLIRHYDVHCQQFFCDYCQKCFRSKTTLKAHIKNHLFKQSFVCNLCGKNFSSKTGLHTHQRTHSLVKLFKCDKCGFAAKHQSGIYIHTLSRHNVAESIVCELCGRSFKNKMRLNEHLKRKHETPKRYACDKCDNRFKQMYQLRCHYRTHTGEKPYICEMCGRGFTRSDGLKEHKRVHALKYDLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -