Basic Information

Insect: Phenacoccus solenopsis
Gene Symbol: -
Assembly: GCA_009761765.1
Location: chr3:24850523-24859925[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0002 0.014 15.3 7.3 3 23 2 23 1 23 0.94

2 27 0.00034 0.023 14.6 1.7 3 23 39 58 38 58 0.97

3 27 6.4e-06 0.00043 20.0 2.9 2 23 65 87 64 87 0.96

4 27 3.6e-05 0.0024 17.7 2.4 1 23 93 116 93 116 0.96

5 27 0.0034 0.23 11.4 1.4 2 23 127 148 126 148 0.97

6 27 0.089 6 7.0 5.9 1 23 166 189 166 189 0.96

7 27 0.024 1.6 8.7 4.0 1 23 205 228 205 228 0.89

8 27 0.00058 0.039 13.8 1.0 2 21 239 258 239 259 0.94

9 27 0.00054 0.036 13.9 0.1 2 23 265 287 265 287 0.93

10 27 8.8e-05 0.0059 16.4 2.1 1 23 293 316 293 316 0.98

11 27 0.00027 0.018 14.9 0.6 1 23 322 345 322 345 0.97

12 27 0.0012 0.078 12.9 0.3 1 16 351 366 351 367 0.94

13 27 6.2 4.2e+02 1.2 0.1 6 23 368 384 366 384 0.89

14 27 1.8e-05 0.0012 18.6 3.8 2 23 391 413 390 413 0.93

15 27 0.00011 0.0075 16.1 4.5 1 23 419 442 419 442 0.94

16 27 0.044 3 7.9 0.2 2 23 453 475 452 475 0.96

17 27 3e-05 0.002 17.9 0.9 1 23 497 520 497 520 0.96

18 27 0.013 0.87 9.6 1.1 1 23 536 559 536 559 0.97

19 27 0.0059 0.39 10.7 1.6 2 20 570 588 569 590 0.93

20 27 0.0022 0.15 12.0 0.1 2 23 596 618 596 618 0.97

21 27 4.9e-05 0.0033 17.2 0.2 3 23 626 646 624 646 0.98

22 27 6.8e-06 0.00046 19.9 5.6 1 23 652 674 652 674 0.99

23 27 0.077 5.2 7.2 0.2 1 11 680 690 680 693 0.88

24 27 0.00038 0.025 14.4 3.4 3 23 699 719 698 719 0.97

25 27 0.00022 0.015 15.2 0.6 1 23 724 747 724 747 0.93

26 27 0.18 12 6.0 1.6 1 22 753 774 753 776 0.85

27 27 0.00037 0.025 14.5 1.1 1 20 780 799 780 801 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0002	0.014	15.3	7.3	3	23	2	23	1	23	0.94
2	27	0.00034	0.023	14.6	1.7	3	23	39	58	38	58	0.97
3	27	6.4e-06	0.00043	20.0	2.9	2	23	65	87	64	87	0.96
4	27	3.6e-05	0.0024	17.7	2.4	1	23	93	116	93	116	0.96
5	27	0.0034	0.23	11.4	1.4	2	23	127	148	126	148	0.97
6	27	0.089	6	7.0	5.9	1	23	166	189	166	189	0.96
7	27	0.024	1.6	8.7	4.0	1	23	205	228	205	228	0.89
8	27	0.00058	0.039	13.8	1.0	2	21	239	258	239	259	0.94
9	27	0.00054	0.036	13.9	0.1	2	23	265	287	265	287	0.93
10	27	8.8e-05	0.0059	16.4	2.1	1	23	293	316	293	316	0.98
11	27	0.00027	0.018	14.9	0.6	1	23	322	345	322	345	0.97
12	27	0.0012	0.078	12.9	0.3	1	16	351	366	351	367	0.94
13	27	6.2	4.2e+02	1.2	0.1	6	23	368	384	366	384	0.89
14	27	1.8e-05	0.0012	18.6	3.8	2	23	391	413	390	413	0.93
15	27	0.00011	0.0075	16.1	4.5	1	23	419	442	419	442	0.94
16	27	0.044	3	7.9	0.2	2	23	453	475	452	475	0.96
17	27	3e-05	0.002	17.9	0.9	1	23	497	520	497	520	0.96
18	27	0.013	0.87	9.6	1.1	1	23	536	559	536	559	0.97
19	27	0.0059	0.39	10.7	1.6	2	20	570	588	569	590	0.93
20	27	0.0022	0.15	12.0	0.1	2	23	596	618	596	618	0.97
21	27	4.9e-05	0.0033	17.2	0.2	3	23	626	646	624	646	0.98
22	27	6.8e-06	0.00046	19.9	5.6	1	23	652	674	652	674	0.99
23	27	0.077	5.2	7.2	0.2	1	11	680	690	680	693	0.88
24	27	0.00038	0.025	14.4	3.4	3	23	699	719	698	719	0.97
25	27	0.00022	0.015	15.2	0.6	1	23	724	747	724	747	0.93
26	27	0.18	12	6.0	1.6	1	22	753	774	753	776	0.85
27	27	0.00037	0.025	14.5	1.1	1	20	780	799	780	801	0.95

Sequence Information

Coding Sequence: ATGTGCTATAAATGCGGTAAATGTTTCAAGCACAAAAGCAGCTACAGAAACCATTTGAAATTCGTGCACGCCTCGAACCCGCAAACGGTGCAGAAACCGCGCACCAAACGTATGTGCGAGATGTGCGGCAAAGTATGCAGCAGTAGCGGTCTGAGGTCGCATATGCTGCGCCACACGAATCCGGAGATGTTGAAGTGTCACGAGTGCGATCGAGTGTTCGCGTTTCCGTCCACGTTGAAGAGTCACGTACGCGTTTGCCACACAAAAGACAGACCGCACGAGTGCTCGATGTGCCCGAGTACGTTTAAACGAGCCGACTACCTGAGGTCGCACATCAGGTATAAACACTCGGACATGTTGGACAACACGGGCATATTGAAGTGCGAGTTATGCGACAATATATACAAAACGCGAAAATACTATTTGTTGCACTTGAAAACGCACGACAACCTCGAGAAACCGGCGCCGAGGCCGAAGAAAATCGGTCCGTCGTCGTTTCACTGCGACGAGTGCAATTTGGACTTCAAAAAACGCAATTACTATATGCTGCATCATCGCTACGTGCACGTACGCGGTCAACCGTACTCGATCAGCGAATCGGCCGAAGGCCAGTATCAGTGCGATAAATGCGACCGACGCTTTTCGTCGGTCAGCGGGCGTAATTATCATTGTCGTAAAGTACACGATTCTGTGTTCGATATGAATTTCAGCGCGAAATGCGACCATTGCGGGTTGACGTTTAGGAATCGAGTGTTCTACGCCAGACATCAGGCTAAAATAGCCGGCGTACCGACCTGCTATCTGTGCGGGGAGGCGTTCGATAGCGACGAGCAGTTGACCAAGCACATGGACGAGTATCATTCGTCCGACTTGCCATTCGTCTGCGATATATGCCGTACGCGTTTCGTAGCGTTGAAAAATCTCAATCATCATTTGCGCACGAGGCATTTCAACGATAAACCCTACGAGTGCGATTTGTGCGAACATCGGACTACTCGTAAAGACGCCTTGTCTATTCATATCAGGGCTACGCATCTGGGCGAGAAACCATTTCAGTGTACGTTGTGCGGCCGACGATTTTCGCAGAGGACTGATTTGCTATGCGGTAAAGTGGTGAACTCGAAGTTATTCAAAGAGCACAGCCAGCTGCACAGTAATCCGGAATCGATGACTTGCACGCACTGCGGTAAGCTCTTCAGCACCAAGTCGACGCTGAAGAAACATTTCATGTGGACTCACACGACGTTACGACCCTTCATGTGCGATATATGCGGTAGCACGTTCAAACGTAACGATCATTTGAAACTACATCGCGAGCATTTTCACGTGAACAATGACGGTGGCGGAACGGCGTTGAAGTGCGGTGTATGCGGATCGTCGATGCAGACGTTGATATCGTTGCAAAGTCACATGAAACGGGTACACGGGAAGTCGAAGGTGGAGGCGTTCGATAAAGACCTTAACCACAAGATATTGCCCGATAAATCGTACGAATGCGGTATTTGTAATATGAATTTCAAGCAATTCAGTTACCTCAGAATACACATAAAATTTGTACACGAAAAAGGCCTACCGTGGCATATCAACCAAGGCGCCAACGGTCCGTATAAATGCGAACCGTGTAATTCGACGTTTGCGACGTTGCAAAGTTTACGCGAGCATAATCGCAGACGTCACGATAGCGCGCCGGTCGAGAAATTCCACAAAGAGTGCGACCATTGCGGTATGATGTATCGTAATCGGCTTCATTATTCCAAACATTTGGCCAAAATTAACGGCAGACCTACGTGCTACGTTTGTTGGAAAGATTTCGACGATAAGGATATACTGAAGGCGCATATCAATACCGATCATCTGGACGAACTGCCGTTCGGATGCGAGCTGTGTGGCGTTCGATTCGTTTATTTGTCCGAGTTGAGGACTCATATGTACACGCATTCGGCGACCAAAGAGTTTAAATGCGAGATGTGCTCGCAGTGTTTCGTAAGAAAGGATTTCCTTAAGTCTCATATGCGGCGACATCTCGGTATTAAGAATCACGTGTGCGAAGAATGTAACAAGAGTTTCGTCGAATCTCGTAGAGCGTTTCGTATGTGCCACTTGTGCGGTAAAAATTACAATACAGAGAGTGGTTTTCGACACCATTTGATTATGCACGGAGATCCATCATTTTCGTGTCATCTTTGCGGTAGTGTTTTCTACGAAGCTCAGAACTTAAAAAAGCATTTAGCCGCCTTACACTCGGACGAGAGACCATTCCAGTGCCACCTATGTGGTTTACAGTTCCAAATTAAGAAATACTACGATCAGCATGTAGCCGCAAAACACTTCAATACCTTTAAATGTGTTCATTGCGAACAAGTGTTCGATAATAAGTACCAAATGACGAAACACGTGGATTCAAATGAG
Protein Sequence: MCYKCGKCFKHKSSYRNHLKFVHASNPQTVQKPRTKRMCEMCGKVCSSSGLRSHMLRHTNPEMLKCHECDRVFAFPSTLKSHVRVCHTKDRPHECSMCPSTFKRADYLRSHIRYKHSDMLDNTGILKCELCDNIYKTRKYYLLHLKTHDNLEKPAPRPKKIGPSSFHCDECNLDFKKRNYYMLHHRYVHVRGQPYSISESAEGQYQCDKCDRRFSSVSGRNYHCRKVHDSVFDMNFSAKCDHCGLTFRNRVFYARHQAKIAGVPTCYLCGEAFDSDEQLTKHMDEYHSSDLPFVCDICRTRFVALKNLNHHLRTRHFNDKPYECDLCEHRTTRKDALSIHIRATHLGEKPFQCTLCGRRFSQRTDLLCGKVVNSKLFKEHSQLHSNPESMTCTHCGKLFSTKSTLKKHFMWTHTTLRPFMCDICGSTFKRNDHLKLHREHFHVNNDGGGTALKCGVCGSSMQTLISLQSHMKRVHGKSKVEAFDKDLNHKILPDKSYECGICNMNFKQFSYLRIHIKFVHEKGLPWHINQGANGPYKCEPCNSTFATLQSLREHNRRRHDSAPVEKFHKECDHCGMMYRNRLHYSKHLAKINGRPTCYVCWKDFDDKDILKAHINTDHLDELPFGCELCGVRFVYLSELRTHMYTHSATKEFKCEMCSQCFVRKDFLKSHMRRHLGIKNHVCEECNKSFVESRRAFRMCHLCGKNYNTESGFRHHLIMHGDPSFSCHLCGSVFYEAQNLKKHLAALHSDERPFQCHLCGLQFQIKKYYDQHVAAKHFNTFKCVHCEQVFDNKYQMTKHVDSNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -