Psol006191.1
Basic Information
- Insect
- Phenacoccus solenopsis
- Gene Symbol
- -
- Assembly
- GCA_009761765.1
- Location
- chr3:46430269-46432733[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8.1e-05 0.0054 16.5 0.9 2 23 222 244 222 244 0.97 2 19 1.8e-05 0.0012 18.6 0.1 1 23 250 272 250 272 0.98 3 19 0.0012 0.078 12.9 1.1 1 23 278 301 278 301 0.96 4 19 0.013 0.87 9.6 4.5 1 23 307 329 307 329 0.98 5 19 3.1e-05 0.0021 17.8 4.3 1 23 335 357 335 357 0.98 6 19 0.00017 0.012 15.5 4.2 1 23 363 385 363 385 0.97 7 19 0.00098 0.066 13.1 0.9 3 23 393 413 391 413 0.98 8 19 9.1e-06 0.00061 19.5 2.5 1 23 419 441 419 441 0.98 9 19 1.2e-06 7.9e-05 22.3 1.5 1 23 447 469 447 469 0.97 10 19 5.4e-06 0.00036 20.2 0.5 3 23 477 497 475 497 0.98 11 19 5.2e-06 0.00035 20.3 2.9 1 23 503 525 503 525 0.97 12 19 3.4e-06 0.00023 20.9 5.2 1 23 531 554 531 554 0.96 13 19 5.6e-07 3.8e-05 23.3 2.0 1 23 560 582 560 582 0.99 14 19 8.7e-06 0.00059 19.6 0.7 3 23 590 610 588 610 0.98 15 19 1.9e-05 0.0013 18.5 1.8 1 23 616 638 616 638 0.97 16 19 2.3e-06 0.00016 21.4 1.6 1 23 644 666 644 666 0.98 17 19 4.3e-06 0.00029 20.5 3.1 1 23 672 694 672 694 0.98 18 19 5.9e-06 0.00039 20.1 0.6 1 23 700 722 700 722 0.98 19 19 0.0001 0.007 16.2 2.3 1 23 728 750 728 750 0.98
Sequence Information
- Coding Sequence
- ATGTATATGCCTATGAAAAATAACGCTTCGAAAGAAGAAAAGGATTATGAAGAGATCCCTACTTCCGTTTCTAAAGAAAAAACAAAAGTGGGTGTTGAGGCATGCAACGGTGATGATTGCGAACCAATAGAATATTTATTAGAAACGTGTATCAAAGAAGAAAGCTCAGATTTAAAGCTTGAATTTGAAGATTTACCGAAAGAAATTACTGCTCCTGTGGTTGCGAACAGTTCCTTGAAAATATCAAGTTTTATTGATTCAAAATGCGAGGACCAGGTTAAAAATTCGATAGATTGCAGTTCAAATACGGATGAAGAAGATCAGACTCCCTTTGAAAATATTGGAGATAATCGAATTTCACTTCCATTGAAATTGGACGATGACTCGAAGAAAAATTGTGAGAAAAGTAATGATGCAGAAGAAAAATCCTTGATTCACGTTGAAAATCATAACGTCGAGTTGGATTTAGACGCAGCGATCACTAAGCAGATTGCCAGTAAGGAGGATGAGATTTCATACTTTCACCGAGAAGATATTATTGCTTCACAGAATAATGCAAAATTAGCAATGAGGACAAAAGTTAAAATGGAAAGAAAAAATCGTGTAGGAAAATTGAGCGACAAGATGGAAAGTGAATGCGTGAAAGAACGTATTCGATTAGCAAAATGCAAACTATGCCCAGAAAGTTTTGCGAGTCGAGAGTTATTACATAATCATGTGAATACAGTTCACGCCAAACAAAAATCATTCAGTTGTAATGATTGCGGTGCAGATTTTGCGAGTAGGCGTTTATTGGAAAAACACGTGGCTACTCATTTTGGTACAGAATTATTTGAATGTAAATGTTGCGCGGAAATTTTTAGCGATAATAGCACTCTGCAATCGCATATCTCAACCATTCATATCGAAGAGCAACTTTTTTCTTGTGAATTTTGTTGCAAAACGTATGAATCGAAGAATAATCTTAAAATGCACTTATTATCGCATGAATTAAGGAAGAATTACCGATGTTCCCATTGTAAACGTATTTTCAAAACGAAGGAAAAATTAGAACAACACGTAGAGAAACACACGCACGAGAAAAGATTTTGCTGCAGTAGTTGTGACAAACGATTTACATCGCAATCGAAATTAGATATTCATACGAAAATTCACACTGGCGAACGTCCATTTGGTTGCGAATATTGCCCTAAACGTTTCATTACACGTTGGAAGCAAAAATTACATACCCGAATCCATACTGGTGAGAAGCCGTTCTCTTGTACTACTTGTCGCAAAAATTTCATATCCAAAGATAAGCTGCAGACTCATTTACGCGTTCATAAAGGCTTGAAATTGTTCGTTTGCGAGTACTGCGACAAGAAGTTCTATACAAAAGAACAGCTACGCGTACACACTGTCACACACACGGGAGAAAAAGCATTCGGTTGCGAGATTTGTGAGAAGCGTTTCGTTTCTCGCTCCAAATTACAAATACACGTTCGTATGCATACTGGAGAGAGACCATTCGCTTGCCAATCTTGCGGTCGTAGCTTCATATCGAATCATAAATTACAAACTCATTTAAGGACCCACAGCGGAGAAAAACCATTTGAATGCGATCACTGTAACAAATGTTTCACTTCTAAAGAACTCTTGCAGTCTCATATTAATCAAACGCACTTTGGATTGAAGCCATTTCGTTGCGAAATGTGCGACAAACGCTTCGTGAGCCGTTACAAATTACAGTTACACATTCGCAGCCATACCGGCGAAAAACCGTTTGGTTGTGAATTCTGTGAAAAGTCCTTCGTTACTCGTTATAAATTACAAGTTCATTTGCGCATCCACACTGGTGAACGTCCGTTCGCTTGCTACCTATGCGAACGTTGTTTCATATCGAATGACAAATTGCAAGTTCACATTAGATCTCATACTGGCGAACGGCCGTACATGTGCGAACATTGTAACAAATCTTTCATATCCAGTGACAAACTATTAATGCATGTTCGAATTCATAATGGCGATAAACGTTTTAGCTGTGAAACTTGCCAAAAAAGTTTCATTACCCGTTACAAACTGCAATTACATACTAGAACGCATACCGGCGAAAAGCCTTTTATTTGTACGGTCTGTACCAAAGGGTTCATCACTAATGATAAACTCAAGGTTCACACGCGTATCCATACAGGCGAGAAACCCTACATTTGCGTTTATTGTAACAAAGGATACATAACCAATTGTAAACTGCAAGTTCATCTTAAAACACACACCGATGAGACCATTCTCAGAAGCGTTCATTGGCTGTTGCAATAG
- Protein Sequence
- MYMPMKNNASKEEKDYEEIPTSVSKEKTKVGVEACNGDDCEPIEYLLETCIKEESSDLKLEFEDLPKEITAPVVANSSLKISSFIDSKCEDQVKNSIDCSSNTDEEDQTPFENIGDNRISLPLKLDDDSKKNCEKSNDAEEKSLIHVENHNVELDLDAAITKQIASKEDEISYFHREDIIASQNNAKLAMRTKVKMERKNRVGKLSDKMESECVKERIRLAKCKLCPESFASRELLHNHVNTVHAKQKSFSCNDCGADFASRRLLEKHVATHFGTELFECKCCAEIFSDNSTLQSHISTIHIEEQLFSCEFCCKTYESKNNLKMHLLSHELRKNYRCSHCKRIFKTKEKLEQHVEKHTHEKRFCCSSCDKRFTSQSKLDIHTKIHTGERPFGCEYCPKRFITRWKQKLHTRIHTGEKPFSCTTCRKNFISKDKLQTHLRVHKGLKLFVCEYCDKKFYTKEQLRVHTVTHTGEKAFGCEICEKRFVSRSKLQIHVRMHTGERPFACQSCGRSFISNHKLQTHLRTHSGEKPFECDHCNKCFTSKELLQSHINQTHFGLKPFRCEMCDKRFVSRYKLQLHIRSHTGEKPFGCEFCEKSFVTRYKLQVHLRIHTGERPFACYLCERCFISNDKLQVHIRSHTGERPYMCEHCNKSFISSDKLLMHVRIHNGDKRFSCETCQKSFITRYKLQLHTRTHTGEKPFICTVCTKGFITNDKLKVHTRIHTGEKPYICVYCNKGYITNCKLQVHLKTHTDETILRSVHWLLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -