Psol005157.1
Basic Information
- Insect
- Phenacoccus solenopsis
- Gene Symbol
- Zfy1
- Assembly
- GCA_009761765.1
- Location
- chr3:16338555-16343259[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 7.4e-07 5e-05 22.9 2.2 2 23 55 76 54 76 0.97 2 19 1.9e-07 1.3e-05 24.8 0.4 1 23 82 104 82 104 0.99 3 19 4.4e-08 2.9e-06 26.8 4.7 1 23 110 132 110 132 0.98 4 19 1.5e-05 0.001 18.8 0.9 1 23 138 160 138 160 0.98 5 19 0.0064 0.43 10.6 0.0 2 23 167 188 166 188 0.96 6 19 0.00012 0.0082 16.0 0.9 1 23 194 216 194 216 0.98 7 19 0.077 5.2 7.2 0.3 1 21 221 241 221 244 0.88 8 19 0.003 0.2 11.6 0.2 1 23 250 272 250 272 0.92 9 19 1.3e-05 0.0009 19.0 2.5 1 23 278 300 278 300 0.98 10 19 1.4e-08 9.3e-07 28.4 2.0 1 23 306 328 306 328 0.98 11 19 4.8e-07 3.3e-05 23.5 1.9 1 23 334 356 334 356 0.99 12 19 0.00038 0.026 14.4 4.8 1 23 362 385 362 385 0.97 13 19 4.5e-05 0.003 17.3 0.4 1 23 392 414 392 414 0.98 14 19 0.00011 0.0075 16.1 2.1 1 23 420 443 420 444 0.96 15 19 0.00021 0.014 15.2 0.1 2 23 451 472 450 472 0.96 16 19 0.024 1.6 8.7 0.5 10 23 481 494 479 494 0.95 17 19 4.2e-06 0.00029 20.6 5.9 1 23 500 522 500 522 0.98 18 19 1.4e-05 0.00097 18.9 6.6 1 23 528 550 528 550 0.99 19 19 0.00021 0.014 15.2 0.4 2 23 566 588 565 588 0.96
Sequence Information
- Coding Sequence
- ATGAACGGGTTCAAAAATGCCAGCGAAGGCAAAGAAAACACCGATGAAAATCTGTACAACGAATATGCCTCTGAGGTGGTGATTGGAAACGAGGTGGTAATCGAAACGGAAAACGATATAGAATTATCCTACGGCGATAGCGACATCTCAGAAATCCCGCTCAGCTGTACGTACTGCAACAAGACGTTCAACAAGCGCAGCAAACTAGCCCAGCACATTCGCATGCACACGGGCGAACGTCGATTCAAATGCCCTTACTGCGAAAAAGGCTTCAATCAGCGAGTAAACTTGGATAATCACATACGCGTGCATACCGGCGAAAAGCCATTCTCTTGCGAATACTGCCACAAAAGCTTCAGCCAGCAAGGTAACCTGAAGACGCACATGCAAAAGCATCTGTACATCGAGTACTTCATCTGTCAATACTGCAAGGTGAATTTCCGTTCGAAAGCCGAACTAAACGAGCACGTTAAAACGCACTTGGACAACGTTCTGTTAGAATGCCCGTTCTGTCAGGTGGTGTTCGGCACCGAAGAAGAGATCAATGAACACATACAAATACACTCGGAAGAGAATCTGTTCATATGTTTGATTTGCAAGGAAAACTGCGCCAGCCAGAGTGATCTGAATGAGCACGTGAAAACGCACAATCAAAATCCATACGAGTGTATATATTGTAAGCAGATGTTCGAAAACGAAGACGAACTGGTCGACCATTTCACCGCCTTCCACCGTAACGGGAATGTGTTCGAGTGCGTGTATTGCCAGCGTTATTTCGAAACAGCCGCCGAACTGAATTACCACAGCGAGGCGCACAAAGGCGAGAAACCGTTCAAATGCCAATACTGCGGCGAACGATTTTGCAACGAGGTGTACCTAGCTAAGCACGTGAAACTGCACGAAGGTTCTAAATCGTTCGTTTGCTCGTACTGTAATCGCAGCTTCAGCCAGAAAGGTAATCTTAATACGCACATCAGACGACACACAGGCGAACGCCCGTTCAAGTGTACCGGCTGCGAGAAAATGTTCAGCGATTACTCCACCTTTACGAGGCACGTGCGAGTGCATACCAGAGAGAAACCGTATAAGTGTAAGTACTGTTTGCGACCGTTCTCGCAACTCTCCAATCTCAAGTGCCACATTCAACGGCGTCACGACACCGAAGAGAGTAAATTCGAGTGCGAGTATTGCGTGAAGCATTTCGAATCGGAGGAAGAATTGTTGGCTCACTTGGAAACGCACACCGGTGACAAACCGTATGTGTGCCAGGTCTGCCTGAAGAGTTTCAGCCAGTGGGCGAATCTGAAATGCCACATTCTGAGCGGCCACCACGCCAAACACGGACTGCTCATATGCGAGTACTGCGAAGCGTACTACGACACGCAGGAAAACCTGGAGGAGCACTTGAAAACGCACACCGTGCGAGTACTGCGAGCGTTTTTCCGCAATCAGTCCGTACTGCGTCGCCACATCAGAGTGCATACCGGCGAAACGCCGTACTCGTGTCCGTACTGCAATAAGTGCTTCAAAACGCATTCCGAAAATAAACTCCACATCAGGATACACACCGGCGAAAAACCATACTCGTGTTCACATTGTAACAAAACCTTCCGCACGCATTCGGCCATCAAAATACACCAGAAAACTCACACCATCGATTCGTCCGGCAAGTTGATGATGACTAATTCGGTGCTGAAGTGTAGCTGGTGTAATTCGAAATTCAACAACGCCGCTGATCTACGTTTACACGTTCGAAAGCTGCACGACGCGAACTGGCAGCCCGACAATGATGAGAATTCCACCGAAGAAGATGTGATGGAGGTGACAGTATCCCAAGACATTGAAGAAGAGGAAGACGAAGAAGTCGAAGAGTTCGAGCTCATTGGACTCGAAGATGTAATCAAAACGGAACCTTTGGATAATGATATGATCGAGGAAATTTCATTCTTCGTTTAA
- Protein Sequence
- MNGFKNASEGKENTDENLYNEYASEVVIGNEVVIETENDIELSYGDSDISEIPLSCTYCNKTFNKRSKLAQHIRMHTGERRFKCPYCEKGFNQRVNLDNHIRVHTGEKPFSCEYCHKSFSQQGNLKTHMQKHLYIEYFICQYCKVNFRSKAELNEHVKTHLDNVLLECPFCQVVFGTEEEINEHIQIHSEENLFICLICKENCASQSDLNEHVKTHNQNPYECIYCKQMFENEDELVDHFTAFHRNGNVFECVYCQRYFETAAELNYHSEAHKGEKPFKCQYCGERFCNEVYLAKHVKLHEGSKSFVCSYCNRSFSQKGNLNTHIRRHTGERPFKCTGCEKMFSDYSTFTRHVRVHTREKPYKCKYCLRPFSQLSNLKCHIQRRHDTEESKFECEYCVKHFESEEELLAHLETHTGDKPYVCQVCLKSFSQWANLKCHILSGHHAKHGLLICEYCEAYYDTQENLEEHLKTHTVRVLRAFFRNQSVLRRHIRVHTGETPYSCPYCNKCFKTHSENKLHIRIHTGEKPYSCSHCNKTFRTHSAIKIHQKTHTIDSSGKLMMTNSVLKCSWCNSKFNNAADLRLHVRKLHDANWQPDNDENSTEEDVMEVTVSQDIEEEEDEEVEEFELIGLEDVIKTEPLDNDMIEEISFFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -