Psol005521.1
Basic Information
- Insect
- Phenacoccus solenopsis
- Gene Symbol
- -
- Assembly
- GCA_009761765.1
- Location
- chr3:28102525-28110822[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00041 0.027 14.3 1.8 1 23 23 45 23 45 0.98 2 24 2.7e-05 0.0018 18.0 1.6 1 23 51 73 51 73 0.98 3 24 4.6e-06 0.00031 20.4 0.3 1 23 79 101 79 101 0.98 4 24 4.3e-06 0.00029 20.5 3.3 1 23 107 129 107 129 0.98 5 24 1.6e-05 0.0011 18.7 1.5 1 23 135 157 135 157 0.97 6 24 3.9e-05 0.0026 17.5 1.4 1 23 163 185 163 185 0.99 7 24 0.00027 0.018 14.9 2.6 1 23 300 322 300 322 0.99 8 24 6.9e-06 0.00047 19.9 0.9 1 23 328 350 328 350 0.98 9 24 4.6e-06 0.00031 20.4 0.7 1 23 356 378 356 378 0.97 10 24 0.16 11 6.1 6.9 1 23 384 406 384 406 0.97 11 24 1.2e-05 0.00081 19.1 0.5 1 23 412 435 412 435 0.98 12 24 1.9e-06 0.00013 21.6 1.5 1 23 441 464 441 464 0.98 13 24 0.0019 0.13 12.2 0.7 1 23 537 559 537 559 0.98 14 24 0.00021 0.014 15.2 5.2 1 23 565 588 565 588 0.96 15 24 2.6e-05 0.0017 18.1 0.7 1 23 594 616 594 616 0.96 16 24 1.5e-06 0.0001 22.0 5.6 1 23 622 644 622 644 0.99 17 24 0.0076 0.51 10.3 4.0 1 23 650 672 650 672 0.95 18 24 0.00013 0.0089 15.9 2.0 1 23 677 699 677 699 0.98 19 24 3.5e-05 0.0023 17.7 0.9 1 23 714 736 714 736 0.98 20 24 0.004 0.27 11.2 5.4 1 23 742 764 742 764 0.96 21 24 3.3e-05 0.0022 17.8 0.1 1 23 770 792 770 792 0.98 22 24 0.00012 0.0081 16.0 2.1 1 23 798 820 798 820 0.96 23 24 0.00017 0.011 15.5 3.5 1 23 826 849 826 849 0.97 24 24 1e-05 0.00071 19.3 1.4 1 23 854 876 854 876 0.98
Sequence Information
- Coding Sequence
- CTCGCAACCCACTCGAACGAACTTCCAGCAAGTAAAACAAACAACCAAGATGATGCTGAAAGACCCTTCATGTGCGATTTATGCGGAGCTACGTTTAAGATCAAAAGATGTCTTATTAGTCACGAACGAACTCATACCGACGAGAGACCGTATTCTTGCGTATTATGCGGAGCTGCGTTTAAACACCCGCACAATTTATCGAAACATGAAAAAATCCACATTAACGATAAACCATTCGTTTGCTCTGTCTGTGGCAATAGATTCAGTTTAAAAGATACATTACAAAGGCATATGGCCATTCATACTGGCGAAAAGAAATTCAAATGCGAATTCTGCGATGCTTCGTTTATCCAAAAATTCCACTTGAAATCACACATGAGAGGTCATACCGGTGAAAAACCGTACGCTTGTGAATTCTGTGGTGAAAAGTATACCAATAATACTTCGCTGACGAACCACTACAGATATCATGAAGAATACAAACCTTATAAGTGTCGTTTTTGTGATCAAGGGTTCAGATCCAAGATGGCCTTATACGATCATATGAAAGTGCATACAACATTAACTGGTACTGATTTGGAAAATGTAATCAACGAACAAAAACTTAATACCAAAGAGCCGATAAATGCGATCAAAATACATCACAAAATCTATTCCCGTTTACAGGGTAATGAAGAACATATTATTCACATGCTATCGAATGTTGAAATGCGAGTGGAAGAATCGCTAGATACAGTCATGACTGAAGGTTATGGTGTAAAAGAAGTTGATTCAGCGGTGAAGAACTTCTTAAAAAAACAAATCGAAAGGAAATCCAAAAGCCTTCGAAAACTGAAACGAGACGCCGAAAAACTCATCAGATCAAAAGAACCAAAGACCACCCAGTCATTTGAAAATTACACGTGTGACATATGTAATACTAATTTCAAACTCGAGCGAAATTACACCAAACACAAATTAACTCATTTGGACAAGGGACCATTCAAATGCCCATTATGTGAAAAAGAATTCGATACCAGGCAAAGCCTAAAGAGTCACCAACAGGCTCATATCGTTAATAAATCATTCATTTGTGATTACTGTTCGGTTTCTTTTCGATCCAAAGCTTCGTTACGACGTCATATTGTACGACATTTGGGAATATCGCGTTATAAATGTAGATTCTGTAAAATGAAAATTTTTCAAAAACACCATCTCGTAGTACACGAACGAACGCACACTGGAGAAAGGCCTTTCAAGTGTGATATATGTAATTCGGCTTTTATATCTAAAGGCAATTGGAATCTTCATATGAGAAGAACTCACTCTAAAGAAAATCCTTTTAAATGTCGATTTTGTGAGAAAGCTTTCAAGACTAGATGGTCGTTGAATGCTCATATCCGTAAAGAGCACGCTGATGTTGCCGAATCGGTGAACCTTAAGAAATCAAATAAAAATTCTCAAGTTGCTCAGTATTCCTTTCCTTCAGAGATTGATGGCAATTATCAAGAAGGCCAAAATATTAATCTGCAATCACATGAGGAACAAGAATTGAAACAACCAGTGAAACCGAAACGTAACAAAGTTACCAAAACGAAATTAGATATTCCTACAAATAAAGATGGACTGTTCGAGTGTAACCAGTGCAAGGCTACGTTTAATATAAAAAGATCTTGGATAAGTCACCAAATCACACATAGCGATGAGAAATTACACGCTTGCTCAGACTGCAGTGCTAGCTATAAACATCGGCATAATTTGTTGAAACATATACGCGTGACACACATGAAAGAGAAACGATTCTTGTGTAGCTATTGCGGAGCTGAATTCGCCGTCAAGGATACATTGGTACGCCATATGCATACTCATACTGGCGACCGACCTTTCCAGTGTGAATATTGCAAGGCTACGTTTAGTCAGAAGTATCACATTCGAAAGCATATGCGCACTCATACCGGAGAAAAACCCTACCAATGTAATTACTGCGAAGCCAGTTTCAATAACAGTACAACGTTGAAATGCCACCTCACTCAGCACACCGGTGAACGTTTTGAATGCTCTATTTGTAAATTAGTGTTCAATTCGAAACATACTCTGGGAAAGCATCGATTAATCCATACTACTGAGAAACCTAAACGTGTTTATTCGCAAGAAAAACCTTATCAGTGTGATATCTGCTTAACATCGTTTAGAAGCAGATACGCTTTAACTTCTCATTTCATGGTGCATACCGGTGAAAAACCATACCAATGTGATCTGTGTGGTAAGCAATTCAGATGTCAACGTAACTTGAAAACTCATTCGTACAGACATACAGGCGAAAGACCTTACATATGTAAAATATGTAACGCCGGTTTTGTTCAATCTACTGGCTTGAAAATGCATATGCTTATTCACAGCGACGAAAGACCATTCAAGTGCGAATACTGCGATTCGACGTTTAAGTCGAAGAAAATGCTAAATGAGCATTCTTCAATTCACTTCGATGGAAAGGAATTCAGATGTGAGCACTGCGATGCCACTTTCAAGTTGAGACGTTATTTGAAGCAGCATGTGCGTTATATTCATGAAACTAATGGGTTCGTTTGTGGTGTTTGCAATTCTTCGTTTAAATACCAGCGTGCACTGAAGAAGCATATGACCACCCATTCGTATGAATTACAAAGTAACGAT
- Protein Sequence
- LATHSNELPASKTNNQDDAERPFMCDLCGATFKIKRCLISHERTHTDERPYSCVLCGAAFKHPHNLSKHEKIHINDKPFVCSVCGNRFSLKDTLQRHMAIHTGEKKFKCEFCDASFIQKFHLKSHMRGHTGEKPYACEFCGEKYTNNTSLTNHYRYHEEYKPYKCRFCDQGFRSKMALYDHMKVHTTLTGTDLENVINEQKLNTKEPINAIKIHHKIYSRLQGNEEHIIHMLSNVEMRVEESLDTVMTEGYGVKEVDSAVKNFLKKQIERKSKSLRKLKRDAEKLIRSKEPKTTQSFENYTCDICNTNFKLERNYTKHKLTHLDKGPFKCPLCEKEFDTRQSLKSHQQAHIVNKSFICDYCSVSFRSKASLRRHIVRHLGISRYKCRFCKMKIFQKHHLVVHERTHTGERPFKCDICNSAFISKGNWNLHMRRTHSKENPFKCRFCEKAFKTRWSLNAHIRKEHADVAESVNLKKSNKNSQVAQYSFPSEIDGNYQEGQNINLQSHEEQELKQPVKPKRNKVTKTKLDIPTNKDGLFECNQCKATFNIKRSWISHQITHSDEKLHACSDCSASYKHRHNLLKHIRVTHMKEKRFLCSYCGAEFAVKDTLVRHMHTHTGDRPFQCEYCKATFSQKYHIRKHMRTHTGEKPYQCNYCEASFNNSTTLKCHLTQHTGERFECSICKLVFNSKHTLGKHRLIHTTEKPKRVYSQEKPYQCDICLTSFRSRYALTSHFMVHTGEKPYQCDLCGKQFRCQRNLKTHSYRHTGERPYICKICNAGFVQSTGLKMHMLIHSDERPFKCEYCDSTFKSKKMLNEHSSIHFDGKEFRCEHCDATFKLRRYLKQHVRYIHETNGFVCGVCNSSFKYQRALKKHMTTHSYELQSND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -