Psol001599.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phenacoccus solenopsis
Gene Symbol
-
Assembly
GCA_009761765.1
Location
chr1:41126639-41129251[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 1e-06 7e-05 22.5 5.4 2 23 206 227 205 227 0.96
2 19 3.1e-05 0.0021 17.9 1.3 2 23 236 257 235 257 0.96
3 19 1.7e-07 1.2e-05 24.9 0.4 1 23 263 285 263 285 0.97
4 19 4.5e-07 3e-05 23.6 1.0 1 23 291 313 291 313 0.98
5 19 0.00091 0.061 13.2 0.8 1 23 319 341 319 341 0.98
6 19 6.4e-06 0.00043 20.0 1.0 1 23 347 369 347 369 0.95
7 19 7.5e-07 5.1e-05 22.9 1.3 1 23 375 397 375 397 0.99
8 19 3e-08 2e-06 27.3 1.8 1 23 403 425 403 425 0.97
9 19 9.2e-07 6.2e-05 22.7 0.6 1 23 431 453 431 453 0.97
10 19 3.2e-07 2.1e-05 24.1 0.4 1 23 459 481 459 481 0.98
11 19 1.4e-06 9.5e-05 22.1 1.0 1 23 487 509 487 509 0.98
12 19 2.1e-07 1.4e-05 24.7 0.2 1 23 515 537 515 537 0.98
13 19 2.6e-06 0.00017 21.2 0.1 1 23 543 565 543 565 0.94
14 19 0.036 2.4 8.2 0.2 1 20 584 603 584 605 0.96
15 19 0.013 0.9 9.6 0.0 1 21 632 652 632 654 0.90
16 19 2.3e-07 1.6e-05 24.5 2.4 2 23 662 683 661 683 0.96
17 19 2.4e-06 0.00016 21.3 4.7 1 23 689 711 689 711 0.97
18 19 7.9e-05 0.0053 16.6 4.8 1 23 717 739 717 739 0.99
19 19 0.00024 0.016 15.0 0.6 2 23 746 767 745 767 0.95

Sequence Information

Coding Sequence
ATGCATTTAACTTCGGAAAACAGTGACATGGCAGTTGCTTACAGCATGGATCAGAATTCACTTGTTAGTGAAAACGATGCGATCAAGAGCGAATCGTTAACTAATCTGGGCACCAGTCATTCAGCCGGCGAGAGCTTTGAAGACGCTTACGTGAAAAGATTTCACGAAAATGTTGGCTATAGTTTCCTTCTACCACCATTACCTAACGGTCCAGATGATACCCTGGCTCCGTTGAGTTTTGATGCAATTTCCAAAGCAATGGGTTCAAATTGTAACGTCTCTAGTATATCAGATGCTCAATTTCATATGACTATTGTTAAAATGAATTCCTTATTAGACGAGCACGCATATCAAACCGCGTATGTTTTACAAGAAGGCGCCAATAACCAGTTGACCGATGATGCTCAAATGTCCAATCACTACTTACAGAAATCCATGGAATCGTTGAAAAACGAATTAAAAGACGATGATAAAATTAATAACGATAAATCTCTACCTCTTATGAATTTGTTACCTAATTGTTCAGATTTCCCGCCACACGAGCATTTAAACGGGGAACGTGATAATGTTGTCGAACAACAAAATCAAAGTAACGAAACACGAGGCAATGAACTGCAGTGTCATGAATGTGGTAAACATTTTGCTAATAAGCATAATTTGAAAGTTCACATGTACATTCATACTGGAGAAAAACGGGAAAAATCGTATTGTCCGACTTGTAAGAAAGGATTCGTGAAACCGTGCGATTTACGCCGACATATGGTCATACATTCCGGTATAAAGCCATTCGATTGTAAAGAGTGTGGTATGACGTTTGCCAATCCCTCAACTCTGAGGCAACACGCTCGAACTCATACGGATAAAAAATCTTATAATTGTTCTGACTGTGGCAAACTATTTACTTCTAATTACTCGCTTCAAAGACATTTGATTAGTCACAGGAACACTCCGCTGTTTAAATGTGATAGGTGTAATGCAGCTTTGAATTCAAGGTATGATTTGAAAATTCATACCATGAAGCATAACGGTGCTTTACCTTATCCGTGTACTGTGTGTCACAAAAGCTTCGGCAAACCTTCAGATTTGAATAGACATTTCGTTGTGCACACTGGAGAGAGACCTTTTCAGTGTACATTGTGTGATAGCACGTTTACCAACTCGAGTAATCTACGTATGCATTTGATTACTCACTGTAAAGTAAAACCTCATCCTTGTAACATGTGTGATAAATCATTCCGTCGGCCAAGTGATTTAGAAAGACATCGATTAACACACACAGGCGAACGTCCTTTCATATGTAGCATTTGCAATATGGCTTTCACTACGAATTATAATTTAAAAATACATCTCTTAAAGCATAGCGGTGGTCTTCCCTATCCTTGTTCTTTATGCGAAAAATCGTTCAGTAAACCCTCGGAATTACAGCGTCACACATTGGTGCATTCGGGCGAACGACCGTTTCGCTGTGATCAGTGTCAAATGAGCTTTACTAACGCTAGTAATTTGAAATCGCACGGACTCACTCATAGCGGCAAAAAACCATATCCATGCGAAGCATGTGGCAAAACATTTTCCAGACCGTCTGATGTGAAAAGACACTTACTTACACACATGGGAGCTCGACCGTTCGCCTGCACAGTTTGCGGTATGGCTTTCGCTGATTCTTCCAACCTAAAGAAGCACGCTTTAGCTCACGCCAAAGGTGACTCGGCCGATAAACTGGACGAAAAAGACAACTTACAATGTACCTTCCGCTGCAACTTTTGTTCAGCGGTTTTTCTGTCCAATGAACAGCTGCAAACGCATTTGGTGAACGATAGATGTCGTCCAAACCAGAATATAGAATCATTTATGTATTTAAAAGAAGAAACGAACTCAACCTCTAAATCACCTTATATATGTGTAGTTTGTGGAGCTGAATTCGCGCACGCTATTTCATTACAAGAACATGCTGTGGATCACGCCGACATTACGTCTAATTGTCGTTGCGATATATGCGATAAAACTTTCATCCAACAATCTTACCTGAAGATGCACATGGCTACGCATACTGAAGCGCGACCCCATACGTGTGATGTTTGTGGTAAAAGTTTCAAGAGCATGTCGCATTTGAAAAACCATCGCTCCATTCATTCAGGAATTAAACCTTACACTTGTTCTACTTGCGGTAAAACATTTCTAAAACATTCATCTCTTAGACGACACCTCACCACGCACGATCGCGTTAATCCGGTCGTCTGTAATATTTGTAATAAGACTTTTCTTAATCAGGAATACCTTAGGAAGCACAGTGTCACTCATGCTAGTTCCTGA
Protein Sequence
MHLTSENSDMAVAYSMDQNSLVSENDAIKSESLTNLGTSHSAGESFEDAYVKRFHENVGYSFLLPPLPNGPDDTLAPLSFDAISKAMGSNCNVSSISDAQFHMTIVKMNSLLDEHAYQTAYVLQEGANNQLTDDAQMSNHYLQKSMESLKNELKDDDKINNDKSLPLMNLLPNCSDFPPHEHLNGERDNVVEQQNQSNETRGNELQCHECGKHFANKHNLKVHMYIHTGEKREKSYCPTCKKGFVKPCDLRRHMVIHSGIKPFDCKECGMTFANPSTLRQHARTHTDKKSYNCSDCGKLFTSNYSLQRHLISHRNTPLFKCDRCNAALNSRYDLKIHTMKHNGALPYPCTVCHKSFGKPSDLNRHFVVHTGERPFQCTLCDSTFTNSSNLRMHLITHCKVKPHPCNMCDKSFRRPSDLERHRLTHTGERPFICSICNMAFTTNYNLKIHLLKHSGGLPYPCSLCEKSFSKPSELQRHTLVHSGERPFRCDQCQMSFTNASNLKSHGLTHSGKKPYPCEACGKTFSRPSDVKRHLLTHMGARPFACTVCGMAFADSSNLKKHALAHAKGDSADKLDEKDNLQCTFRCNFCSAVFLSNEQLQTHLVNDRCRPNQNIESFMYLKEETNSTSKSPYICVVCGAEFAHAISLQEHAVDHADITSNCRCDICDKTFIQQSYLKMHMATHTEARPHTCDVCGKSFKSMSHLKNHRSIHSGIKPYTCSTCGKTFLKHSSLRRHLTTHDRVNPVVCNICNKTFLNQEYLRKHSVTHASS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-