Basic Information

Insect: Phenacoccus solenopsis
Gene Symbol: -
Assembly: GCA_009761765.1
Location: chr1:39417026-39427008[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.35 24 5.1 0.3 1 23 20 43 20 43 0.87

2 30 7.4e-06 0.0005 19.8 1.9 1 23 46 68 46 68 0.97

3 30 6.9e-06 0.00046 19.9 2.5 1 23 74 97 74 97 0.97

4 30 0.0053 0.36 10.8 1.2 1 23 106 128 106 128 0.95

5 30 5.9e-06 0.0004 20.1 1.3 1 23 134 156 134 156 0.98

6 30 0.00026 0.017 14.9 6.6 1 23 162 185 162 185 0.98

7 30 2e-07 1.3e-05 24.8 1.7 1 23 191 213 191 213 0.99

8 30 0.00012 0.0079 16.0 0.2 2 23 220 241 219 241 0.97

9 30 2.3e-06 0.00015 21.4 0.1 1 23 247 269 247 269 0.97

10 30 0.015 1 9.4 0.3 1 13 275 287 275 289 0.90

11 30 0.0056 0.37 10.7 0.1 1 23 298 321 298 321 0.96

12 30 0.00065 0.044 13.7 5.6 1 23 324 346 324 346 0.97

13 30 0.00042 0.028 14.3 1.6 1 23 352 375 352 375 0.96

14 30 0.0092 0.62 10.1 0.6 1 23 383 405 383 405 0.97

15 30 1.8e-06 0.00012 21.8 1.0 1 23 411 433 411 433 0.97

16 30 2e-05 0.0013 18.5 0.6 1 23 439 462 439 462 0.98

17 30 0.0021 0.14 12.1 3.8 1 23 468 490 468 490 0.98

18 30 1.2e-05 0.00081 19.1 0.1 2 23 498 519 497 519 0.97

19 30 1.5 1e+02 3.1 0.2 1 8 525 532 525 535 0.92

20 30 0.00024 0.016 15.0 1.7 1 23 559 582 559 582 0.96

21 30 1.2e-08 7.8e-07 28.6 1.5 1 23 585 607 585 607 0.99

22 30 5.4e-05 0.0036 17.1 2.1 2 23 614 636 613 636 0.97

23 30 0.039 2.6 8.1 4.0 1 23 645 667 645 667 0.97

24 30 4.1e-05 0.0027 17.5 2.4 1 23 673 695 673 695 0.97

25 30 2.8e-06 0.00019 21.2 0.7 1 20 701 720 701 721 0.96

26 30 9.4e-06 0.00063 19.5 3.3 1 23 730 752 730 752 0.98

27 30 0.0013 0.087 12.7 4.8 1 23 759 781 759 781 0.96

28 30 2e-05 0.0013 18.5 0.9 1 23 787 809 787 809 0.95

29 30 0.0019 0.12 12.3 0.3 1 20 815 834 815 837 0.93

30 30 0.0011 0.072 13.0 5.5 2 23 845 866 844 867 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.35	24	5.1	0.3	1	23	20	43	20	43	0.87
2	30	7.4e-06	0.0005	19.8	1.9	1	23	46	68	46	68	0.97
3	30	6.9e-06	0.00046	19.9	2.5	1	23	74	97	74	97	0.97
4	30	0.0053	0.36	10.8	1.2	1	23	106	128	106	128	0.95
5	30	5.9e-06	0.0004	20.1	1.3	1	23	134	156	134	156	0.98
6	30	0.00026	0.017	14.9	6.6	1	23	162	185	162	185	0.98
7	30	2e-07	1.3e-05	24.8	1.7	1	23	191	213	191	213	0.99
8	30	0.00012	0.0079	16.0	0.2	2	23	220	241	219	241	0.97
9	30	2.3e-06	0.00015	21.4	0.1	1	23	247	269	247	269	0.97
10	30	0.015	1	9.4	0.3	1	13	275	287	275	289	0.90
11	30	0.0056	0.37	10.7	0.1	1	23	298	321	298	321	0.96
12	30	0.00065	0.044	13.7	5.6	1	23	324	346	324	346	0.97
13	30	0.00042	0.028	14.3	1.6	1	23	352	375	352	375	0.96
14	30	0.0092	0.62	10.1	0.6	1	23	383	405	383	405	0.97
15	30	1.8e-06	0.00012	21.8	1.0	1	23	411	433	411	433	0.97
16	30	2e-05	0.0013	18.5	0.6	1	23	439	462	439	462	0.98
17	30	0.0021	0.14	12.1	3.8	1	23	468	490	468	490	0.98
18	30	1.2e-05	0.00081	19.1	0.1	2	23	498	519	497	519	0.97
19	30	1.5	1e+02	3.1	0.2	1	8	525	532	525	535	0.92
20	30	0.00024	0.016	15.0	1.7	1	23	559	582	559	582	0.96
21	30	1.2e-08	7.8e-07	28.6	1.5	1	23	585	607	585	607	0.99
22	30	5.4e-05	0.0036	17.1	2.1	2	23	614	636	613	636	0.97
23	30	0.039	2.6	8.1	4.0	1	23	645	667	645	667	0.97
24	30	4.1e-05	0.0027	17.5	2.4	1	23	673	695	673	695	0.97
25	30	2.8e-06	0.00019	21.2	0.7	1	20	701	720	701	721	0.96
26	30	9.4e-06	0.00063	19.5	3.3	1	23	730	752	730	752	0.98
27	30	0.0013	0.087	12.7	4.8	1	23	759	781	759	781	0.96
28	30	2e-05	0.0013	18.5	0.9	1	23	787	809	787	809	0.95
29	30	0.0019	0.12	12.3	0.3	1	20	815	834	815	837	0.93
30	30	0.0011	0.072	13.0	5.5	2	23	845	866	844	867	0.94

Sequence Information

Coding Sequence: ATGGTTCTTGTGGATTTACAAAAACCAAATACTCTCGTAGCTGAAAAAAATTATGCTTATTTTTGCGATGTTTGTTCGATCACTTTCAATGAACAGTTACCATATTTGAAACATTACGAAGAAGTGCACAAACAATTCAAATGCCCGTTTTGTGTAAAATCGTTCAATCGTCGTTATTCATTGGAGAATCATTTGTTCGTACATAGTACAAGACGAGATTTTCCGTGTACCATGTGCACTATGAAATTTAAACGTAATTACGATCTTAAGCAGCATATTAAAAGGATGCACAATAAATTTTTCGAAGTACGAATTTTCGAATGCGCCGATTGCGATTATAAGACGAAACATAAAAATCAGATGAGAATACACGCGCTCGGTCATTTAGGTATTTCGCCTTATGTTTGCGAAACATGCGGTAAAACTTTCAAGACGAATTTAGATTTTACCGTGCATCGTAATAATCACCTGGGCATTAAACCATTCCAATGTGATATTTGTGGTAACCATTTTACTAGGAAGCATTACATGCTGAAACATCGTAAAACTATGCACGAAGAATTGTATGCTTTTCAGTGCGATATCTGTGGGAGGAGTTTTTCCTACAGGACGAGTTTGAATACACATCTGAAATCACACAGCGGTGAAAATAGAGTACAATGCGATATATGTAATAAAATAGTCAGCAGTAAAGTAGCGCTGAATAATCATAAAAAAATTCATTCGGATGTAAAAGAATTCGTTTGTGGTATTTGCGGCAAGGTTTATATTAATAAGTATTCGTTGCAGGAACACGTACTCGTGCATACGGGTAGTAAGCCCTTCCAGTGTTTGCAATGCGATAAATCGTTTTCTACTCTAAAAGCCGAGCCGAAATCAGATAACAGTATGTTCGCGTGCTCTGTGTGCGGGGAAGATTGCGTGAACGAGGGAAAACTGGCCGAACACGCTCGAGTGCAACATAAATCGCATAAATGTTATTTTTGTAATAAGATCTTCGCTCATAAGTATACGCTGGAGAATCACTTGTACGTGCACACGGATAAACGTAAACATCCGTGTTCGCAGTGCACATTATCGTTCAAACGGGAGGTAGATCTTTTGAATCACGTGAAACGTACGCACGCTAGAACTGAAGTAGTGTTGTATCGATGCGATAAATGCGAATATACGTCTAGAAATCGGTTCGGCATCAAAGTACATATTTTAGCCCACGAAGGTATATCTATTTATAATTGCGACGAATGCGGTAAAGGATTTAATTCGAAATCGGGACTGAGAACGCATAAAAATAATCATATCGGGTTTAAACCCTTTCAATGTGATATATGCGGTAATAGCTTTACTAGAGGACCTTACCTGAAACAGCATAGAAAGATGGTGCATGAAAATCCGCATTCTTTCAAATGCGATATTTGCTGTCGTGGATTCTCGTTGAAATCGACGTTGAAAAATCACTTAAAATTGCATACTGGGGAGAATAAAAGTCTTACTTGCGATATGTGCGGCAAAGCGGTATCTAGTAGGAATGCGCTCATTAATCATCAAAGGATACACACCGGAGATAAACGATTCTCTTGTAATGTTTGCGGTAAAGCGGAGAAATCACCAAAAAGGATTCCAAAGAGTGAAACTGATAATTGTGAAAACGAGCTTGAGGATTTTAAGAATTCATACAACTGTCATTTATGTTACAAAGTATATGAAAATAACGAAGATTTGCAAGAGCATCTGACTAAAATGCATCGTTGCTTCAAATGTCCGCTGTGTCAAAAATGTTTCACTCGCGCTGCTAATTTAAGAGCTCACATGAACGTACACTCTGAGTTCAAAAACGTAAAATGTGACCGTTGCGGTTCGTTTTTCAAATCTAAAAACGACTTGAGATCTCATATGAAACGTATGCACCCCGATCCGAAGACCGTTGTTTATTTCAAATGCACTTATTGCGATTACAAAACCAATTTCAAAAATCGCCTAGATAAGCATACGATGTTGCATACTGGTGTATATTTGCATTATTGTGAGGAGTGCGGGCGCGGGTTCAATCATTCGTTGGATTTACAAACGCATATTAATAACCACAAAGGAATTCGACCCTATCAATGCGAAATGTGCGGTAAAAGCTTTAATCGGGAATCGTATATGAAAAGGCATCGCGAATGTGTACATATTAAACCACATTCGTACGAATGCGCTCACTGCGGCAAACGGTTTTCTTTTAAATATTCGATGAAGTCTCATATCAAAGGGCATCTTGGCTTGATGACTTCACATTGTTGCGATGTTTGCGGAAAACAACTTTCTAGTAGGATGTCTTTGCGCAATCATCGTCGTTTACACTTCGATGAAAAACCTTTTAAATGCGAAATTTGCGATAAACGATACGCTACGAATGGAGAACTGAAATCACATTCCTTTAGTCATGTAGAGGAGAAACCATTCAAATGTGAAGTATGCGCGAAAACCTTTAGGGCGGCGTTTATGCTGAAGAATCATTTACCTGTGCATAGCGCGAAAAGGACTTTACTTAATTGCCCATTTTGTGATAAAAAATATTACCGATCTCATTCAGTTAAGCAACATGTACGAAAGCATCATCCGAGCAAAGCAGAAGCTTTACCTTCTCAATAA
Protein Sequence: MVLVDLQKPNTLVAEKNYAYFCDVCSITFNEQLPYLKHYEEVHKQFKCPFCVKSFNRRYSLENHLFVHSTRRDFPCTMCTMKFKRNYDLKQHIKRMHNKFFEVRIFECADCDYKTKHKNQMRIHALGHLGISPYVCETCGKTFKTNLDFTVHRNNHLGIKPFQCDICGNHFTRKHYMLKHRKTMHEELYAFQCDICGRSFSYRTSLNTHLKSHSGENRVQCDICNKIVSSKVALNNHKKIHSDVKEFVCGICGKVYINKYSLQEHVLVHTGSKPFQCLQCDKSFSTLKAEPKSDNSMFACSVCGEDCVNEGKLAEHARVQHKSHKCYFCNKIFAHKYTLENHLYVHTDKRKHPCSQCTLSFKREVDLLNHVKRTHARTEVVLYRCDKCEYTSRNRFGIKVHILAHEGISIYNCDECGKGFNSKSGLRTHKNNHIGFKPFQCDICGNSFTRGPYLKQHRKMVHENPHSFKCDICCRGFSLKSTLKNHLKLHTGENKSLTCDMCGKAVSSRNALINHQRIHTGDKRFSCNVCGKAEKSPKRIPKSETDNCENELEDFKNSYNCHLCYKVYENNEDLQEHLTKMHRCFKCPLCQKCFTRAANLRAHMNVHSEFKNVKCDRCGSFFKSKNDLRSHMKRMHPDPKTVVYFKCTYCDYKTNFKNRLDKHTMLHTGVYLHYCEECGRGFNHSLDLQTHINNHKGIRPYQCEMCGKSFNRESYMKRHRECVHIKPHSYECAHCGKRFSFKYSMKSHIKGHLGLMTSHCCDVCGKQLSSRMSLRNHRRLHFDEKPFKCEICDKRYATNGELKSHSFSHVEEKPFKCEVCAKTFRAAFMLKNHLPVHSAKRTLLNCPFCDKKYYRSHSVKQHVRKHHPSKAEALPSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -