Psol004890.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phenacoccus solenopsis
Gene Symbol
Prdm14
Assembly
GCA_009761765.1
Location
chr3:8943690-8951005[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 7.9e-05 0.0053 16.6 0.2 1 23 137 159 137 159 0.98
2 35 4.2e-06 0.00029 20.6 1.0 1 23 189 211 189 211 0.98
3 35 7.2e-06 0.00048 19.8 1.5 1 23 229 251 229 251 0.98
4 35 0.017 1.1 9.2 0.7 1 23 256 278 256 278 0.96
5 35 0.00049 0.033 14.1 2.1 1 20 284 303 284 306 0.92
6 35 3.8 2.6e+02 1.8 6.1 1 23 311 333 311 333 0.94
7 35 0.00023 0.015 15.1 3.6 1 23 339 361 339 361 0.97
8 35 0.018 1.2 9.1 5.3 1 23 365 387 365 387 0.98
9 35 0.0048 0.32 11.0 0.4 1 23 482 504 482 504 0.98
10 35 1.7e-05 0.0011 18.7 4.4 2 23 511 532 510 532 0.96
11 35 0.0065 0.44 10.5 0.4 1 23 535 557 535 557 0.97
12 35 1.1e-05 0.00072 19.3 3.9 1 23 562 584 562 584 0.99
13 35 1.5e-07 9.9e-06 25.2 0.6 1 23 588 610 588 610 0.99
14 35 5.1e-06 0.00035 20.3 2.0 1 23 614 636 614 636 0.99
15 35 2.5e-05 0.0017 18.1 1.8 1 23 640 663 640 663 0.97
16 35 2.3e-05 0.0015 18.3 4.9 1 23 668 690 668 690 0.98
17 35 0.004 0.27 11.2 1.4 1 23 694 716 694 716 0.99
18 35 1.3e-06 8.9e-05 22.1 2.5 2 23 724 745 723 745 0.97
19 35 0.24 16 5.6 3.1 1 23 749 772 749 772 0.96
20 35 7.5e-06 0.0005 19.8 3.1 1 23 792 814 792 814 0.98
21 35 0.00097 0.065 13.1 5.2 1 23 818 841 818 841 0.97
22 35 0.00019 0.013 15.4 1.3 1 23 850 872 850 872 0.97
23 35 6.6 4.5e+02 1.1 1.2 5 12 879 886 878 888 0.84
24 35 0.00023 0.015 15.1 4.2 1 23 908 931 908 931 0.97
25 35 3.2e-05 0.0021 17.8 2.9 1 23 939 961 939 961 0.96
26 35 0.00086 0.058 13.3 4.5 1 23 965 987 965 987 0.98
27 35 2.2e-06 0.00015 21.5 1.0 2 23 993 1014 992 1014 0.97
28 35 5.3e-07 3.6e-05 23.4 1.6 2 23 1028 1049 1027 1049 0.96
29 35 0.00019 0.013 15.4 0.7 1 21 1055 1075 1055 1078 0.90
30 35 0.099 6.7 6.8 5.0 1 22 1084 1105 1084 1109 0.93
31 35 0.014 0.95 9.5 2.2 1 23 1112 1134 1112 1134 0.97
32 35 0.0013 0.09 12.7 0.4 1 23 1140 1162 1140 1162 0.98
33 35 0.00014 0.0092 15.8 0.3 2 23 1169 1190 1168 1190 0.97
34 35 0.0003 0.02 14.8 4.2 1 23 1194 1217 1194 1217 0.98
35 35 0.001 0.069 13.1 0.2 1 23 1223 1245 1223 1245 0.98

Sequence Information

Coding Sequence
ATGTACTCCGGCCAGAATATACTGCAGAATTTCAACGAAACCCCCTATCAGTACACTCCTGGTAGTAATGTTCCCAATATCAAGATTGAAAGGGAGGACGATTATGAAAACGCAGTCGAGGATGAGGGTGGTTACGATCAGTATGGTTACAATGATTCTGATGTTAGTCATAACATACAACCTGAAATCATTCATAGCACCCCAAATAATGTACAGAATAAGTTATCAGCTGCTGACAAATTGAAGAATTTCTTCTTACACGAAGGCATCCGACTACCACGCGGAACGGAAATCCTACTGGCGCCGTCATCATCCGGTGACTCGGGCCACGACAATGGCAACCCTTCGGCTCCGCTCGATCATTACCAAGCGGATGGTAACTCGCAGCAACCCAAATACGAAAAAAACTACCCATGTTCCTTATGTGATAAAGCTTTCAGCACCGAATTATTCCTAGCCACGCACCTCCGTTTGCATACTTTAGAATCACTTCCGGAGCACCAGTTGAATTTAGAACGCGAACTAGACGCGCAAAAAGAAACGCTCGGCGCGAATTCCAATACGTTCGTTTGCCCTGTGTGCGAGAAAAGCTTCAACATGAAGCGTTACTTATCCAATCATCTGCGCTCTCATAACATGAAATTAGTCGAATCCGATCCGAATTTCGACGGCCAAACGCAAACTTACACGTGTAACCAGTGCCAAAAATCGTACACCAAAAAAGCCTCTTTTATAGCCCACATGAAAGCGCACGACGACCGGCCTTACAAGTGCGACGTGTGTAGTCGCCTTTTCAAGGAGGTGAACTCGTTGAACGTGCACAAATCGTTACATTCCTCGAATTCGAAACATCAGTGTAACGTTTGCGGGTTATTTTTCAAATTCCGATCTCAACTCAAGATCCACGAGTGGACTCATAGTAATAACAAATTCACGTGTAAGTTCTGCGCCAAAATATTCCGCAATTATTTCTCGTGCAAGAGTCACGAGAATAATCACATCAACGGCAAACAATTCATTTGCTGTTTTTGCGAGAAAACTTTCAAGTACAAAGTGGCTCTGAAGACTCACTTGATCACGCATACCAGACCTTACAAGTGCGACTGCTGTAATCGCACCTTCGATACGTCGTTGAAATTGGAGAATCATAAAAAAACACATTTATTCGAAAAATTCCAGTTGAACATTTCGGAAGGGGGGACCGAACCTGAAACTTGTATTAAAGTAGAACCTAGCGAATTAACCGATTACAATACCGTCGGTTCGGAAGGCGAACACGTCCAGTCGGAGGGGTACGACATGAAATCCGAACACACCACAGTCGACGACTGTTTGGTGGAGAATGTGAAATTACATTTTTTAGAAGGAGGGGTGAACGATTTGAGCGAGGCTAATTCCACCGATAAATCCGGCGAGTACGTGGAACAGTCTAGTACCGTTTTGTACTCGTGTCAAGGTTGTCAGATGGATTTTAAGTTTCTCGAAGAATACCAAGGCCATATGGCTAGTCACCAGAGTAACGTGAATTTAAATTGCAAACACTGCGGCCAGCCTTTCAAACGGTATAAAAAATTGGAAAAACATTTACGTAAGCATAACGAGTATAAGTGCGAAAGGTGTATTAAAAGCTTCGAAACGGAGGCGGAATTGTTACAGCATACTATTTACCATAAAGACGAATCGTTCAAATGTAACTACTGCGATAGCATGTTCACCAATAAGTACACCCTGCAGTATCACATCAAAAGGCATTTGAAACGTTACAGGTGTAAGTACTGTCCGAAGAGCTTCGATAACGAGGCCCAACTCGAGACCCACATTAATACTCATCAGTCCGTCTATAAATGCGATTATTGCGAGAAAGACTTCAAATTCCAATCGTTGCTGTCGAACCATTTGAAAATTCATACCAGACCGTTTAAATGTGATAAATGCGATCGGTCGTTCGACAAGAGCACCATGTTGAGTCGACACGAAAGAAACGTTCACGCTGCGGCTCCGTTCGTGTGCCATTTCTGCGACCGTACGTTCTCCTACGAGTCCACGTTTAATACCCATTTAAGGAGTCATAATAGGCAATACCAGTGTGTCTATTGTATGCGCAGTTTCGACGACCAAGCTCGCTACGAGAAGCACGTGAAACGCCACGAAATGCAATATACGGATTTGCAGTGCGATAAATGCGATAAAAAATTCAAGTATAAGTCGCAGCTGCAGTTACATATTAAAAATCACAAGAATTTGTATCGTTGCGAGCAATGCCAAATACAAATGAAGCATTGGAAGAGTTACGAAAAGCATAAAAAATTAGTACACGGTGATGGCGCCGCAGAGGCTCCGGAAGGCTCGCTTGCTAAGCCGACGGAGGAAGCGTTTAAATGCGATAAATGCGATAAAAAGTTCAAATATAATTCGCAACTGTTGTTGCACGTTAAGCAGCACAAAAACGTGCACCGATGCGACCAATGCGAGATGCAGTTTAAACACTGGAAGAGTTATCAGAAGCACGTGCGTAGCGTGCACGAGGAGAAACAAGAACACGAGGAATTCGCATGCACCCAATGCGAGGCTAAGTTCAGATACCAAAGCCAGCTGAAGTATCACTTGGAATCGCATAATCGCAAATACGCCTGCCATTGCGGTAAAACGTTCAATTCGCATAAAGTTCAGATATTACTCGGAGCTGAAGTTGCACGCGAAGAAGCATTGAAAGAGTGCACATTCCAGTGTTACCATTGCGAAAGGCATTTCCAAACGAAGGCCAAGTTACAACGTCACATCGAAGTGATCCACATGCGAGCCCCGAAGAGCGAATTTAAATGCGAATCGTGCGACAAAACGTTCAAATATTTGTCGCAGCTGAAAACGCATTCGAATCTGCACGAACGACTTTACAAATGTAAATTATGCGATAGATCGTTCAATAACAAACGTTATTATATATTTCACATGAATAAACACCAGAATATCAACCTGTCGTGCCAACAGTGCGGTAAAACGTTCCCGTATTATTCGAAGCTGCAGATACACATGAAATCGCACGCGACCGCTAAACGAACGATGAGAAAGAAATGCTCGTGGAATTGCAACCTGTGCGGCAAAAGGTTTAAGTTCCAGTCGTTGCTGAAAAATCACATGAAAATCCACGAAGGCGTGAAACCCTACCAATGCGATTACTGCGGCAAACGATTCGCTTGGAAGAGCAGCCTGCAGATTCACTCGTCGTTCGTGCACAAGCACAAGACGAACTTCCATTGCGAATCGTGCGATCGGTATTTCTTCTACGAAAGCCAATACAAACAGCACATGGCGACGTGCTCGTGGCACGTGTCGTTCAACTGCGAACGATGCGATAAACAGTTGAAGTCGCGTAAAACCTACGAATTGCATTTACTCAAACACGAAGGAGCCCGGCAATTCACGTGCGCCTATTGCGACAAAGGATTTTACGCCAAACAAGTCCTAGTGAATCATATTAAAAATCACATGGAAAAGGAAACGCAAACGTGTCCTATATGCGGTCAACAGTTCACCAGCCAGTACAGATATAATATTCACGTGGACACGCATTCGGTGGAGTTTCGTTGCAGCGTTTGCGACCGAGTGTTTAAATGCAAGTATAAGCTTAAACGTCACGTGATGACGGTGCATCAGAGGCACGCGACGTATTCGTGCGAGCATTGCGGTAAATTGTTCTTACGCGAGGGAGCTCTGATTAACCATCAAGCGGTGCATTTCGGCAAGCAAAGCGGATACGAGCATTCGCCCATGTTTGGGCATGTACTCGATAATTTCGTGGCCGAAGAGGAGGTGGATGTGAAACCAGATATCCCGAGTTGGGTATTTTAG
Protein Sequence
MYSGQNILQNFNETPYQYTPGSNVPNIKIEREDDYENAVEDEGGYDQYGYNDSDVSHNIQPEIIHSTPNNVQNKLSAADKLKNFFLHEGIRLPRGTEILLAPSSSGDSGHDNGNPSAPLDHYQADGNSQQPKYEKNYPCSLCDKAFSTELFLATHLRLHTLESLPEHQLNLERELDAQKETLGANSNTFVCPVCEKSFNMKRYLSNHLRSHNMKLVESDPNFDGQTQTYTCNQCQKSYTKKASFIAHMKAHDDRPYKCDVCSRLFKEVNSLNVHKSLHSSNSKHQCNVCGLFFKFRSQLKIHEWTHSNNKFTCKFCAKIFRNYFSCKSHENNHINGKQFICCFCEKTFKYKVALKTHLITHTRPYKCDCCNRTFDTSLKLENHKKTHLFEKFQLNISEGGTEPETCIKVEPSELTDYNTVGSEGEHVQSEGYDMKSEHTTVDDCLVENVKLHFLEGGVNDLSEANSTDKSGEYVEQSSTVLYSCQGCQMDFKFLEEYQGHMASHQSNVNLNCKHCGQPFKRYKKLEKHLRKHNEYKCERCIKSFETEAELLQHTIYHKDESFKCNYCDSMFTNKYTLQYHIKRHLKRYRCKYCPKSFDNEAQLETHINTHQSVYKCDYCEKDFKFQSLLSNHLKIHTRPFKCDKCDRSFDKSTMLSRHERNVHAAAPFVCHFCDRTFSYESTFNTHLRSHNRQYQCVYCMRSFDDQARYEKHVKRHEMQYTDLQCDKCDKKFKYKSQLQLHIKNHKNLYRCEQCQIQMKHWKSYEKHKKLVHGDGAAEAPEGSLAKPTEEAFKCDKCDKKFKYNSQLLLHVKQHKNVHRCDQCEMQFKHWKSYQKHVRSVHEEKQEHEEFACTQCEAKFRYQSQLKYHLESHNRKYACHCGKTFNSHKVQILLGAEVAREEALKECTFQCYHCERHFQTKAKLQRHIEVIHMRAPKSEFKCESCDKTFKYLSQLKTHSNLHERLYKCKLCDRSFNNKRYYIFHMNKHQNINLSCQQCGKTFPYYSKLQIHMKSHATAKRTMRKKCSWNCNLCGKRFKFQSLLKNHMKIHEGVKPYQCDYCGKRFAWKSSLQIHSSFVHKHKTNFHCESCDRYFFYESQYKQHMATCSWHVSFNCERCDKQLKSRKTYELHLLKHEGARQFTCAYCDKGFYAKQVLVNHIKNHMEKETQTCPICGQQFTSQYRYNIHVDTHSVEFRCSVCDRVFKCKYKLKRHVMTVHQRHATYSCEHCGKLFLREGALINHQAVHFGKQSGYEHSPMFGHVLDNFVAEEEVDVKPDIPSWVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-