Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.031 30 4.1 0.4 16 28 7 19 2 31 0.83

2 12 0.24 2.3e+02 1.3 6.2 18 43 38 60 26 61 0.81

3 12 0.028 27 4.3 2.0 18 29 67 78 54 90 0.80

4 12 0.018 18 4.9 3.6 17 43 94 117 83 118 0.75

5 12 0.031 30 4.1 2.1 18 29 124 135 111 147 0.80

6 12 3.7e-05 0.036 13.5 3.3 17 43 151 174 140 175 0.86

7 12 0.079 78 2.8 0.2 18 29 181 192 178 198 0.87

8 12 0.00012 0.12 11.9 2.6 17 43 208 231 193 232 0.88

9 12 0.082 80 2.8 0.4 18 29 238 249 235 260 0.86

10 12 0.0031 3 7.3 3.8 17 43 265 288 251 289 0.83

11 12 0.0052 5.1 6.6 1.9 18 34 295 308 290 317 0.79

12 12 0.0026 2.6 7.6 0.8 13 40 318 346 309 347 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.031	30	4.1	0.4	16	28	7	19	2	31	0.83
2	12	0.24	2.3e+02	1.3	6.2	18	43	38	60	26	61	0.81
3	12	0.028	27	4.3	2.0	18	29	67	78	54	90	0.80
4	12	0.018	18	4.9	3.6	17	43	94	117	83	118	0.75
5	12	0.031	30	4.1	2.1	18	29	124	135	111	147	0.80
6	12	3.7e-05	0.036	13.5	3.3	17	43	151	174	140	175	0.86
7	12	0.079	78	2.8	0.2	18	29	181	192	178	198	0.87
8	12	0.00012	0.12	11.9	2.6	17	43	208	231	193	232	0.88
9	12	0.082	80	2.8	0.4	18	29	238	249	235	260	0.86
10	12	0.0031	3	7.3	3.8	17	43	265	288	251	289	0.83
11	12	0.0052	5.1	6.6	1.9	18	34	295	308	290	317	0.79
12	12	0.0026	2.6	7.6	0.8	13	40	318	346	309	347	0.87

Coding Sequence: ATGAATTTGAATACCGGACGTTATGAATGCATTTATTGTGATAAGAGGTTTGCTTCCCTGAGAAATTTGGAGATTCACGCCAGAGTACATTTGAATATTAGACCTCATTATGAGTGTCACCATTGTGGTAAGAAGCTTCTGACTAAGAGGTATATGGCAAGTCACATCAAAACAGTACATTTGAATATTAAACCTTATACATGCCCGCATTGTACTAAAAAATTTGCTCGGAAGGCTAGGTTAGACGAACACGTTAGAGTGCATTCAAATGATAGACCATATGAATGCGGCCATTGTGGTAAGAAGCTTCTGACTAAGAGGTATATGGCAAGTCACATCAAAACAGTACATTTGAATATTAAACCTTATACATGCCCGCATTGTACTAAAAAATTTGCTCGGAAGGCTAGGTTAGACGAACACGTTAGAGTGCATTCAAATGATAGACCATATGAATGCGGCCATTGTGGTAAGACCTATTCTACGAAGTCCTCTTTGTCATTTCACATCAAAACAATGCACTTGAATATTAAACCTTATACATGCCCTCATTGTACTAAAAACTTTGCTCAGAAGTATAAGTTAGACGATCACGTTAGAGTGCATCGCAATGATAGACCATATGAATGCGGCCATTGTGATAAGACCTATTCTACGAAATCCTCTTTGTCATTTCACATCAAAACAATGCACTTGAATATTAAACCTTATACATGCCCCCATTGTACTAAAAACTTTGCTCAGAAGTATAAGTTAGACGATCACGTTAGAGTGCATCGCAATGATAGACCATATGAATGCGGCCATTGTGATAAGACCTATTCTATGAAGTCCCATTTGTCATTTCACATCAAAACAATACACTTGAATATTAAACCTTATACATGCCCCCATTGCCATAAAAAGTTTAGTCATAAGAGTAGGTTTGACGTTCACATTAGAATGCATCGCAATGAAAAACCTTATAGATGCGACGAATGCGGTAAAAGTTATGCTCAGAAGTATAGTTTAACCAGACACGCCAGAACACATTTGAATCCTGTACCATAA
Protein Sequence: MNLNTGRYECIYCDKRFASLRNLEIHARVHLNIRPHYECHHCGKKLLTKRYMASHIKTVHLNIKPYTCPHCTKKFARKARLDEHVRVHSNDRPYECGHCGKKLLTKRYMASHIKTVHLNIKPYTCPHCTKKFARKARLDEHVRVHSNDRPYECGHCGKTYSTKSSLSFHIKTMHLNIKPYTCPHCTKNFAQKYKLDDHVRVHRNDRPYECGHCDKTYSTKSSLSFHIKTMHLNIKPYTCPHCTKNFAQKYKLDDHVRVHRNDRPYECGHCDKTYSMKSHLSFHIKTIHLNIKPYTCPHCHKKFSHKSRFDVHIRMHRNEKPYRCDECGKSYAQKYSLTRHARTHLNPVP

Sequence clustering based on sequence similarity using MMseqs2