Psol009763.1
Basic Information
- Insect
- Phenacoccus solenopsis
- Gene Symbol
- -
- Assembly
- GCA_009761765.1
- Location
- scaffold109:42375-42865[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.9e-06 0.0018 17.4 0.0 17 37 1 22 1 28 0.84 2 3 0.29 1.8e+02 1.3 0.0 23 31 29 37 25 38 0.82 3 3 4 2.5e+03 -2.3 0.0 36 44 92 100 89 101 0.82
Sequence Information
- Coding Sequence
- ATGACTTATAGAGAGGCGGTTGAACGATTTGGAATTCCGAAAAGTACATTACAAGATCGGGTATCCAAAATTAAGAAGGAGGCGGTTGAACGATTTGGAATTCCGAAAAGCCACGTCGTAGATTTCAAGCCAAAGTTGGGAAGATTTGAATTAACTTTGAAGGAGGAATGTGAGCTGGAATTAACATCCTATGTCATTGAACTGGACGATTGTATGCCTTTGAATAAGGATGAGTTTAGGAAGCTGGCTTACGAATACGCGTTTTATTATGGATTCAAGAAAAGACATCCAGAATTATCACCAAGAATTGCTCAGGCAATTAGTTCGGATCGCTGCAATGGGTTTAACGAGACTGCCGTGAAAAAATTTTTGGACTTTCTTACTACTCTTTTGGAGAAATACAATTTCGATGCTAGTACTATATACAATGCTGATGAATGTGGCACAGAAGAATAA
- Protein Sequence
- MTYREAVERFGIPKSTLQDRVSKIKKEAVERFGIPKSHVVDFKPKLGRFELTLKEECELELTSYVIELDDCMPLNKDEFRKLAYEYAFYYGFKKRHPELSPRIAQAISSDRCNGFNETAVKKFLDFLTTLLEKYNFDASTIYNADECGTEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -