Psol002179.1
Basic Information
- Insect
- Phenacoccus solenopsis
- Gene Symbol
- -
- Assembly
- GCA_009761765.1
- Location
- chr2:1313302-1315786[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-08 1e-05 24.5 0.0 5 35 59 90 55 99 0.86 2 2 3.4 2.1e+03 -2.1 0.1 29 36 145 152 145 152 0.84
Sequence Information
- Coding Sequence
- ATGAGTCGTAAACAGGATTTTCAGTATACACCATTGCAAGATGATACGAGGGCTACAACGAATGATAATGGTGACAGTTTCAATAATGAAGGAATTGATATCGAAGTTGTTAATGATCTCGATGCCAACGATGCTCCTCCAAGAACAGTGAAAGGAAATTATTCACCTCGTAAACTCAGAAAATGTCTGAATGACATTCAAGAAAACAAACTGAGTGTATCATCTGCTGCAAAATTGTACAAAATCCCAAGATCAACACTCTCTTGTAAATTACTGGGTATTCGGCCCTCAAATAAAAAGAAAAATGGACCGGAAGCTGTGTTAGGGGACCAGACTGAAGAAGTAATCGTTAACTGGCTATTAGACCAATGCCGACGAGGATTCCCACTCAGTAAACCAGAGCTACTGTATAGTGTTCAAACACTGATTGAAAGCAATTCCACTCTACAACGACGTGACCTGCCATTCAAAGACGGCAAGCCAGGGGAGAAAGCAGCTGCTACCCTCCAAAAAATTGAGAATTGGTTCAAGAAAGTTGAACCACTTTTAGATGAAGAAGATATGAAGATTTTTGGTGATTGTGAACGAGTATATAATGTCGACGAATCCACTTTTTTCCTCAATGACAACGGCAAAATAGTTTTAGCAGAAAGAGGTGAACATGTGTATGAAAAAAACAAAAATTCAGACTGTGAAAACCTGACTGTCTCAGTTTGTGCAAACGCAGCTGGGGAATTCGCTCCGTCACTAGTAGTATATGCTTATGAACGACTACCAGCCATCTATAAAGAACTGTTACCAGAAGGGTGGTCAGTGAGAGGTACCGAAAATGGTTGCAGAGAAAAGAAGAAAGATAAATCATCTAAAACTCACCCTCAAACAACTTTAGATTTGGTAGAATCAAAAATCAATGAAGAAATTTTGAAACTTTTTAGAACAGCAGGTGAGATATGGGAGGGAGAAGAAAGGTATGAAGAGTTGTTCTATGTATGGAAACGTTTGATCGATGATGACTTTTCCTACAGTTCTCCGAATTCATCTGAGACTGTTCAAAATAGTGATGCAGTGGACCAACTTCAAAATGACGCTATTGTTATTGAATTCCCAGAACTGGAAATCAATGGTCCGGCGACGCAAGCTGCGGAATTTATGGACAAATGA
- Protein Sequence
- MSRKQDFQYTPLQDDTRATTNDNGDSFNNEGIDIEVVNDLDANDAPPRTVKGNYSPRKLRKCLNDIQENKLSVSSAAKLYKIPRSTLSCKLLGIRPSNKKKNGPEAVLGDQTEEVIVNWLLDQCRRGFPLSKPELLYSVQTLIESNSTLQRRDLPFKDGKPGEKAAATLQKIENWFKKVEPLLDEEDMKIFGDCERVYNVDESTFFLNDNGKIVLAERGEHVYEKNKNSDCENLTVSVCANAAGEFAPSLVVYAYERLPAIYKELLPEGWSVRGTENGCREKKKDKSSKTHPQTTLDLVESKINEEILKLFRTAGEIWEGEERYEELFYVWKRLIDDDFSYSSPNSSETVQNSDAVDQLQNDAIVIEFPELEINGPATQAAEFMDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -