Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.5e-08 3.4e-05 22.9 0.0 3 39 113 150 111 154 0.90

2 4 0.0013 0.82 8.8 0.1 2 32 166 196 165 198 0.93

3 4 0.021 13 5.0 0.1 2 16 199 213 198 218 0.84

4 4 1.3e-13 8e-11 40.9 0.0 3 43 227 268 225 269 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.5e-08	3.4e-05	22.9	0.0	3	39	113	150	111	154	0.90
2	4	0.0013	0.82	8.8	0.1	2	32	166	196	165	198	0.93
3	4	0.021	13	5.0	0.1	2	16	199	213	198	218	0.84
4	4	1.3e-13	8e-11	40.9	0.0	3	43	227	268	225	269	0.94

Coding Sequence: ATGTCTTATTGTGAATGCGAACAACCAGATTTACAGGAAAGGCGCGGCAAAAGTGAAACAGAGGTACCCAGTCAGAGGCAGAAATATCCGGAGGCGATAAAAATGCAGATGCTGGCGTATACGCAGTGGCCGAGAGATATTTCACCGTTTTCCGCCGGCGGAGCGTCGAGGAAGGACAAAGTGGGCATACTTGGCCAGCTTGTGGGATTCAAAGTAGACGGTATGCTCCTCGATGCTGGCGCCGATGCGGTATTCCAACGTTGGGGGTTGAGACAGTTTGACTATTGGGAACATATTGAAACTTTGAGAGGGTGTTCCAGTAGGTTACTCAATAAAGAAGACATGGACGCTACCCTAGATGCCCTACGAAACCATCACATGAGTCTAACCAACGCATCACTAACTTATGGTATTTCGTCAACCACGTTATGGCAGAGAGCTCATCGACTCGGTATCGATACTCCAAAAAAGGATGGACCTTCTAAATCTTGGAATGAAGACGTACTAAACGTTGCATTGGAAGCTTTAAGAACTAGTTCACTTAGTGCCAATAAAGCCACAGCTACATTCAACGTAGCTTCCACTACATGGAGTCAAGAAGACCTGGAAAGAGCTTTAGAAGCTATTAGCACCGAAAAGATTGAATTATCACGCAGCAATCCAACGCCTTGGTCTCAAGATACCGTGACAGAAGCTTTAGAAGCGATTAGATTGGATCAGATGAGTATAAATCAAGCCTCTATTCATTTCAATTTGCCATATTCTTCGCTATACGGTAAATTTAGACGAGGTAAGTACGAAGCCGATCATCCAGATCACGAAGAAGATAACATATCTAATGTCGACGTTCAACAAGCTAATTCGCAGTCGATGGTTCAACACAGCGAACTTCAGCCAGAACCGCAGACTGCATCGCAACAGCCTCAGCAGTCCACCATTCAATCGCAAATCATGCTGTTGCAATATCAGCACACTCCAACCACGCACATTCAAATGTATCAATCTGCGGCGCCTGGTTGA
Protein Sequence: MSYCECEQPDLQERRGKSETEVPSQRQKYPEAIKMQMLAYTQWPRDISPFSAGGASRKDKVGILGQLVGFKVDGMLLDAGADAVFQRWGLRQFDYWEHIETLRGCSSRLLNKEDMDATLDALRNHHMSLTNASLTYGISSTTLWQRAHRLGIDTPKKDGPSKSWNEDVLNVALEALRTSSLSANKATATFNVASTTWSQEDLERALEAISTEKIELSRSNPTPWSQDTVTEALEAIRLDQMSINQASIHFNLPYSSLYGKFRRGKYEADHPDHEEDNISNVDVQQANSQSMVQHSELQPEPQTASQQPQQSTIQSQIMLLQYQHTPTTHIQMYQSAAPG

Sequence clustering based on sequence similarity using MMseqs2