Psol005495.1
Basic Information
- Insect
- Phenacoccus solenopsis
- Gene Symbol
- retn
- Assembly
- GCA_009761765.1
- Location
- chr3:27368282-27372745[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-17 3.4e-14 52.4 0.1 29 89 4 62 1 62 0.93 2 2 2.6 5e+03 -2.6 0.0 31 49 121 139 96 151 0.58
Sequence Information
- Coding Sequence
- ATGGCGAAATCCGTTTTAGATCTATACGAATTATATAAATTAGTAGTACAAAGAGGAGGTCTCGTTGATGTTATTAATAAGAAGCTGTGGCAAGAAGTAATCAAAGGATTGAATCTTCCGTCATCTATTACATCGGCTGCTTTCACGTTACGCACACAATACATGAAGTTCCTATACCGCTACGAATGTCACAAATTAGACCTGAGCAAGCCGCACGAATTGCAGGCAGCCATCGAAGGTAATAAACGCGAAGGCCGTAGGACCAGCTATTATGGCGATCTGGGCCAAATGCAGAGTCCCAATAGCAACGGACCCAATAACGGCCATCCGCCCAGTTCGATGCATCACGGCCAATCTCAAATGTCGCCGGTCAGTTTGGTAACCACTTCTACCTCGAATACCGGTAGCAATCGTCTGCAAATGAACGGTCATTCCAACCAGTTTGCTAGTCATACTGTGACCCTG
- Protein Sequence
- MAKSVLDLYELYKLVVQRGGLVDVINKKLWQEVIKGLNLPSSITSAAFTLRTQYMKFLYRYECHKLDLSKPHELQAAIEGNKREGRRTSYYGDLGQMQSPNSNGPNNGHPPSSMHHGQSQMSPVSLVTTSTSNTGSNRLQMNGHSNQFASHTVTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -