Pobe048367.1
Basic Information
- Insect
- Phasia obesa
- Gene Symbol
- -
- Assembly
- GCA_949628195.1
- Location
- OX451219.1:125856053-125861780[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.5 3.8e+02 3.5 0.5 1 23 500 525 500 525 0.92 2 17 0.0071 1.1 11.5 1.9 2 19 537 554 536 556 0.94 3 17 4.3 6.5e+02 2.7 0.4 3 23 599 620 598 620 0.93 4 17 1.4 2.2e+02 4.2 0.4 5 23 630 648 627 648 0.92 5 17 6e-05 0.0091 18.0 1.1 1 23 655 678 655 678 0.96 6 17 5.9e-05 0.0089 18.0 2.5 2 23 686 707 685 707 0.97 7 17 2.7 4.2e+02 3.3 0.0 1 20 716 735 716 737 0.89 8 17 3.4 5.1e+02 3.0 0.9 1 22 757 778 757 781 0.89 9 17 0.0033 0.5 12.5 3.8 1 23 786 808 786 808 0.95 10 17 1.1 1.7e+02 4.6 0.3 1 23 824 849 824 849 0.96 11 17 0.0083 1.3 11.3 2.4 1 23 859 882 859 882 0.96 12 17 0.0046 0.69 12.1 5.6 2 23 888 910 887 910 0.96 13 17 0.00077 0.12 14.5 2.1 2 23 914 936 913 936 0.92 14 17 0.38 57 6.0 4.8 1 23 942 965 942 965 0.96 15 17 9.8e-05 0.015 17.3 1.1 1 23 970 992 970 992 0.98 16 17 0.0036 0.55 12.4 4.2 1 23 998 1020 998 1020 0.98 17 17 0.69 1.1e+02 5.2 0.6 5 23 1036 1055 1026 1055 0.84
Sequence Information
- Coding Sequence
- ATGGCAGTTAATGTTTCCACAAACGCCAGTGTCTGTTTATATTGCAAAACAAATTCGGATGTTGATGCTGAGAAAGATTTTCACGAAATCTACGATGAAGTGGGCCTGGAACTGCAATTACCCAACTTAGtagaaacattttttcatataaaagtaaaaaatgatgCGAAACAACATTTGTGTGATGATTGTGTTAATCGTCTAATAGAGTTGTTTGATTTGGAAGAACATGCCAAGGAGGAAAGCACTAGGGccgaaaattatataaaaactgaGCCGGATATTGTTAAAACGGAAGATGAAGAATATAGTAATACAGCAGTTATTGCAGTTAAAAGTTTTGATACAGAAAAATCCgatatgtgtttaaaaaatatacttagtaCAGTTCAGGAAGCGTGTGGAAGTAAAAGAGATCCTAAAATTAAGTCACATAAAACTAATACCCCTGAATTCACCTATTTATCTCATAACGATAAAGCTAAAATTCTTAACCAACAATGTGGTTCAAAGGAATTAAATGATCTGCAATATGAGAACATAAGAgatcattttaatgaaaaagataATGAAATTGCTGACAATTTCTCAGACGAAAACTTTATAATTAGAAATGAGAATGATATGTCTCAAGATTTCAATACATCAGCATCTACCAGTCCCATAGAGTTGACAAACTCGAACGAGTTCGAATGCAACGAACATGATGAATTTGTTGAAAATGCTGAAAACGATGAAGATCCAAATATTGACATAGAAATAATGGTTAACAGAAATATTATAGATATCTCGGAAGAACTCGAATTAAAAGCAGTTAAAGCAAAAACTAGCAAGAAAGATCAACTGGCTGAACCAGAAAGTGGAACAATCGATGATAATAAGACAAAGAGCAGTGACCAAATTAATTTAATGGAAGATAGTGTGTATGAACAGGAAACAGTAGACGAaactttaattataaacaataaagACAATATTGAAACTGAAGATAATCAGGAACTTGATATGGAAGATATATTAATTGAAGAAATCGAGGATATTTATTATGAAGACGACGCCACATTGAATGAAGCAACTGATAGCACAAATGAAATAACCAGTTATATgggaaaagaaaatagaaattcaAAAACAACATTAGTAGAATTTCAAAACGTACAAGAAACGGTTACTGtatcatctaactctaatgacgCGGAAAACCAAATGAGTAATACAGAGGATATTGATATTgatgaaattattgaaaatgaTCAGAATGAAGGTTCAAATGATGCCCTTTCCCTTGAAGAGGAGTACTTAACAGAagaaattacTTGTTCCCAGGAATATGACAGTGTTGACTTAAATGCGTATTTGGACAAGgtcttaataacaaaatttcaagatttgttattaaattggGAAACCGAATGTAAATTATGTCTGGATAATTACCCTACCTTCGAAGAACTATTAAAACATACGTGTATAACACAATTTGAAGAGAACCaacagttttgctgtacaattAAAGattgtgaagaaaatataaataatttgccCACTTTGGCCAGACATTTAATACTAAAACATTATGATAAGCTAGAAAGcataGCAATTTATGGTAAATGTCCAGATTGTCAGAAAacattttcgaatattttagattttaataaacattccTGCTGTCGCAATATAAAACGAAAAGCTGGTTCACCTAATTATTGTCAATATTGTGATATGGATTTTCAATCATTAAAAAGGTATGTGTTTCACATGCAATATCATTTAACATACCATCgaccaaaaatatgtttattgtgtggtgatttatttaataattctaaTGATTTCTTTGAACATACTCAATACCAGCATATACCTCAACCTTCTATGGCTTGTATTAAatgCGATCGGTTCTTTAAGGAAAAAGAGGTTTTTGACAGCCATATGGAATTGCATGAAGATTCAAAATATCTATATAGCTGCAGCCTTTGTCCTAAGAAGTATACcaacaaatttggtttaaatcaaCACATGgACATTTATCATAATAGCAAATCCAGTGTCATACAATGCGATCATTGTGAGAaagaatttgttaataaaaactcGTATCGTAATCATATAAAATCTCATGAAACTGATGTTCAAGTGGAAACGTATATATGTTCAACATGTGGTATTATAACGAATAGTTTGGAATCAATTAAGTATCACGTTGACTCAGACAATGATTCGCCTTGTTTTTCATCGccaatagaagaaaaaacttTAGGTTTGGCATATTCATGTGAAAATTGTTCAGTTGATTTTCTTACAATTAAGCAGCTTAAAGAACATCGTTTAAGTAAATATCATAGTGATGATTTATACCAATGCAGTATATGTCAACAACGCTTTAAGAGTCTACGTCATATGCGCAATCATTCCATTAATCACAAGGATTTCAAGGAACGGCAGGCGGCTTTTCCAATAACACGTTATTTCGTCTGCAACATAGGCAACTGTCAAGAGTTCTATCCAATATGGACCTCATTATACTATCATAAAAAACGTCCACATAAAACTGAAGACGACACACCGAACGATTTTAAATGTCAGTTTTGTCAACAATCATGCTCCTCGAAAATGTCTTTAGCTGTTCATGTAGCTAGAAGTCATAATAAtgCCAACGTTAAATGTTCTCACTGCAAAGGAAGTTTTAAATCACAAAAGCTTTTACAACAACATATTCATAAATATCATATACCCGTAGAATGTGAAatctgctttaaaaaatttaaacatcgtCGCAATTTGGAATCACACAATAATTTAGTTCATCTTAATATAAAGCGTTACTTTTGCAATCATTGCGAAAAAGGTTATTTTCATAAAAGCGAAAGGGATATTCATGAGAGAAAAGTTCACCctgaaatttcatataaatgcaGCATTTGCAATTTTACAACCACTTATCCGAATTCCTTGCAAGTTCATATGGACAAACATAATAatcaattgaaatttaaatgtaCAATTTGTAGCAAAGCTTTTGGCCGCAAACAACTTTTACAGTGTCACCTAAAACGACATCTCAACAAAAAAGACTATAGTTGtgccaaatatttaaaagaaagggGTTGTACAGCTACGTTTTTGACTTATAACTTATTAAAAAGGCATATACAAACTAAACATCCGGATTGCAACAATTACTTTAATATGCAAAAGGAAAAACAGCATAACAAATCATCTAGCGAAGTTTTACAAATAGAAACAATTTCCTATGAAATACTAAATTCTGACGATGAAAGTGGAAGCCAGCAAAGTCctaaaacttcaaaatttatGGATGTAGATGAAACGGATTACGAGCAAGATGCTATTGAAATGGTTTTCGAAGATGACGAAGAATTTGATGAAatgtaa
- Protein Sequence
- MAVNVSTNASVCLYCKTNSDVDAEKDFHEIYDEVGLELQLPNLVETFFHIKVKNDAKQHLCDDCVNRLIELFDLEEHAKEESTRAENYIKTEPDIVKTEDEEYSNTAVIAVKSFDTEKSDMCLKNILSTVQEACGSKRDPKIKSHKTNTPEFTYLSHNDKAKILNQQCGSKELNDLQYENIRDHFNEKDNEIADNFSDENFIIRNENDMSQDFNTSASTSPIELTNSNEFECNEHDEFVENAENDEDPNIDIEIMVNRNIIDISEELELKAVKAKTSKKDQLAEPESGTIDDNKTKSSDQINLMEDSVYEQETVDETLIINNKDNIETEDNQELDMEDILIEEIEDIYYEDDATLNEATDSTNEITSYMGKENRNSKTTLVEFQNVQETVTVSSNSNDAENQMSNTEDIDIDEIIENDQNEGSNDALSLEEEYLTEEITCSQEYDSVDLNAYLDKVLITKFQDLLLNWETECKLCLDNYPTFEELLKHTCITQFEENQQFCCTIKDCEENINNLPTLARHLILKHYDKLESIAIYGKCPDCQKTFSNILDFNKHSCCRNIKRKAGSPNYCQYCDMDFQSLKRYVFHMQYHLTYHRPKICLLCGDLFNNSNDFFEHTQYQHIPQPSMACIKCDRFFKEKEVFDSHMELHEDSKYLYSCSLCPKKYTNKFGLNQHMDIYHNSKSSVIQCDHCEKEFVNKNSYRNHIKSHETDVQVETYICSTCGIITNSLESIKYHVDSDNDSPCFSSPIEEKTLGLAYSCENCSVDFLTIKQLKEHRLSKYHSDDLYQCSICQQRFKSLRHMRNHSINHKDFKERQAAFPITRYFVCNIGNCQEFYPIWTSLYYHKKRPHKTEDDTPNDFKCQFCQQSCSSKMSLAVHVARSHNNANVKCSHCKGSFKSQKLLQQHIHKYHIPVECEICFKKFKHRRNLESHNNLVHLNIKRYFCNHCEKGYFHKSERDIHERKVHPEISYKCSICNFTTTYPNSLQVHMDKHNNQLKFKCTICSKAFGRKQLLQCHLKRHLNKKDYSCAKYLKERGCTATFLTYNLLKRHIQTKHPDCNNYFNMQKEKQHNKSSSEVLQIETISYEILNSDDESGSQQSPKTSKFMDVDETDYEQDAIEMVFEDDEEFDEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -