Pobe040515.1
Basic Information
- Insect
- Phasia obesa
- Gene Symbol
- -
- Assembly
- GCA_949628195.1
- Location
- OX451218.1:147051169-147052929[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.2 6.4e+02 2.7 0.9 1 10 267 276 267 290 0.78 2 9 0.017 2.5 10.3 3.4 1 23 297 320 297 320 0.93 3 9 5.5e-06 0.00083 21.3 3.9 1 23 325 348 325 348 0.96 4 9 0.0034 0.52 12.5 1.1 2 23 358 380 357 380 0.95 5 9 7.7e-05 0.012 17.6 0.6 2 23 387 409 386 409 0.95 6 9 0.00018 0.027 16.5 2.3 1 20 417 436 417 439 0.93 7 9 0.36 54 6.1 0.3 2 23 447 471 446 471 0.94 8 9 0.05 7.5 8.8 0.5 1 23 477 499 477 499 0.95 9 9 0.00019 0.029 16.4 4.0 1 23 505 527 505 527 0.98
Sequence Information
- Coding Sequence
- ATGTTGTCCGCAAATAATTTACGGGAGTACTGTCGCACCTGTCTGGTCAAATTGGAAAGGACTAATGAAGATAATTCTAAATCGATTCTCATAAATAAGTTTCCAGATGTAGAGCATTTGATACAAGTTTGTCTTTCAAAAACCTCTGTGTGTGAAGatagtttatgtttttatgcacCATATTTGTGTTGCTCATGTTTTGATAAATGGTTTGACTTCACAAAACTGTACCAACAAGCTGTTAAAATAGAGGAGCAAATTAGAAAGGTGCTGGAAAAGGAAATGCTTAAAACGGAAAATATAggcaaagaatataaacaaaatgaaaatGATAATGAATACTTTATAAATGCGGAATCATTAGTATTCGTATCAAACGAAGTAGAAAAATATGAAACGGATTCTCCATTTTATACTGATAGTCTTTTAAATAACCCAATAAAAGTCATTAAACATAAAGCTACTACTGCAGATGTCCCCGAAAACCCAAATAGACATATTAAACATAAtgcaataaatttattacaattggACGTGGAACATACTGAAGATGATGTTAGCAGCTCCTGCTTATATGCTGTGGAGGATATTGATTTTTCATCTGAACCaaaggataaaaaaatatttacaatcaaaaaagtacaatttaaaaagtctACTAGAAAACCATTTTGTATATCGACAAAAACTAGTAAAACCAGAAAATCATTACTACAGGTTCCAGAGAACCATGTACCCCCCAaagaagagaataaaaatatcgAAGATCTTGGCGATATCGAGAGAAAGAAGGGCCGATACGTATGCGAACAAtgcagtaaatattttttgaagaaaaatatttacgatGGCCATATGAAAAAAGTACATGAAGGAATTAGGCGAGCTTACAAATGTCAAGAGTGTGACAAAGCTTATAATTTATACAGGACTCTTTTACAGCATAAACAAGATTGTCACAGAGAACATGTTTATAAATGTGATAAATGcgataaaacttataaaactaAAGTAACTCTCAAACGGCATGTAACTAAAAAGCATTCTGAACAAAAACAGGCTATGCGCTTGATTTGTGATCAGTGTGGTTTCATTACTGCGCATCAGCAATCCTTATCGCGgcatataaaatacaaacacaCTAAAACAGATCAAATAAAATGTGACCAATGTCCAAAAGTTTTTAGAGAACGATATTCACTCAAATATCACGTAATACGCAATCATAATTCATATAATATAAAACCATTCAAATGTACTGAATGCAAAAAGGAATTTTCTAAAAAAGCTTTGTTGAATCAACATAAGTGGACCCATATAAAATACACTGAACGCATTAAATGCGACTTTGAAGGTTGCGAGGTGCGTTTCATTTCCCATGGTGATAAAGCTTACCACATGCGGTTGGTACATTTAAAAGTGAAGCAGCatatttgtgatttttgtgGAGAAGCATTCGGCGCAATGCAAACACTGCGAAATCATCGATTTATACACACTGGTGAAAAGCCACATAAATGCAGAGTTTGTGGGCAGGGCTTTCGACAGCAAACCACAATGATGAATCATAGAAAAACACATTTTGGAAAAGAAACTGAAAGTGAGGATCTTATTAACAACTTACcagaaattaacttttaa
- Protein Sequence
- MLSANNLREYCRTCLVKLERTNEDNSKSILINKFPDVEHLIQVCLSKTSVCEDSLCFYAPYLCCSCFDKWFDFTKLYQQAVKIEEQIRKVLEKEMLKTENIGKEYKQNENDNEYFINAESLVFVSNEVEKYETDSPFYTDSLLNNPIKVIKHKATTADVPENPNRHIKHNAINLLQLDVEHTEDDVSSSCLYAVEDIDFSSEPKDKKIFTIKKVQFKKSTRKPFCISTKTSKTRKSLLQVPENHVPPKEENKNIEDLGDIERKKGRYVCEQCSKYFLKKNIYDGHMKKVHEGIRRAYKCQECDKAYNLYRTLLQHKQDCHREHVYKCDKCDKTYKTKVTLKRHVTKKHSEQKQAMRLICDQCGFITAHQQSLSRHIKYKHTKTDQIKCDQCPKVFRERYSLKYHVIRNHNSYNIKPFKCTECKKEFSKKALLNQHKWTHIKYTERIKCDFEGCEVRFISHGDKAYHMRLVHLKVKQHICDFCGEAFGAMQTLRNHRFIHTGEKPHKCRVCGQGFRQQTTMMNHRKTHFGKETESEDLINNLPEINF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -