Pobe004272.1
Basic Information
- Insect
- Phasia obesa
- Gene Symbol
- -
- Assembly
- GCA_949628195.1
- Location
- OX451215.1:52267819-52275916[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.089 14 8.0 0.6 1 23 1686 1709 1686 1709 0.92 2 12 2.1 3.2e+02 3.7 1.0 1 23 1871 1893 1871 1893 0.93 3 12 0.0008 0.12 14.4 2.8 2 23 1896 1917 1896 1917 0.97 4 12 3.9e-05 0.0059 18.6 0.2 3 23 1925 1945 1923 1945 0.98 5 12 7.9e-06 0.0012 20.8 5.8 2 23 1952 1973 1951 1973 0.97 6 12 9 1.4e+03 1.7 0.1 5 23 1986 2004 1985 2004 0.96 7 12 0.039 5.9 9.1 0.1 2 23 2043 2063 2042 2063 0.96 8 12 0.00025 0.038 16.0 0.3 1 19 2069 2087 2069 2091 0.95 9 12 5.4e-06 0.00082 21.3 1.8 1 23 2099 2121 2099 2121 0.99 10 12 0.00019 0.029 16.4 6.5 1 23 2127 2149 2127 2150 0.96 11 12 0.0011 0.17 14.0 6.4 1 23 2155 2177 2155 2177 0.99 12 12 0.003 0.46 12.6 5.8 1 23 2183 2205 2183 2206 0.96
Sequence Information
- Coding Sequence
- atggCGGAAAATGTTCAGTGTCCTGTATGTACTTTATACCTGCATGCAGGTATGAACCTTTCGGATCACTTGGAGACTCATCCGAAGGAACAAGTTATTCGCGCTTTAGTACAATTAACAATTTCTGGGACTGGAATTGGGATTACTAGCAGTAATACGTTAGCATCTGTTTTAGGTGGAGAAAGTAGCTTAGGCAACGCTACTAAAAAATCGTCAGCTGATTTGGAAGAGAAACCTTTGTCAAGTATTAAAGGAAATGATCTTAATAAGAGTAGTGCGGACAACAGTTCTAGTGACAATTTAAGCAATTCTGTCAGCAACTATTCATTGTCAAACCAAAGTGTTAACAGTAGTCAAAATTCTAATAAGTCAAATTTTAGCGATACAAAAATTGAACAACATAATGAAAACGAGCAAGACAAAATATCAACATCGTCATCCATTGTACCGATCAAGACAGCGGTTAAGTCAGAGACGACAAATTCAGTGGCaatgacaaaaaataatttagctgGAATTGAAAATATGAGCCAAGGTTTtgctaagcaaaattttaaCCAAGCGATTTTAGGTTCAAACTTAACAAATGAAAATCATTCACATCATCGTAAGTCGTTAGAATTGATAAATGCAGCAAATAGTGTGCATAATAATTTTACTGCTTTTGGGGGTAATGCTCGATTTGAGCATCAACAGCGTGATGGggttaataatcaaaatcagTTATCTACTTTACCACACATGCCACCACCTCCACCTCCACCATCGACGCAAAATCAACATTCTGGTCAACATCAGGAAGTTGGAGGTCGCGGTATTTCACCAACTGGTTCTAGTGGAACATTTCATTCAATACAGCCACAACAATTGCCACCCCCACCGCATCAAACATCGTCGCATTTAGGACATTTATCAAGTGGTCTTCGTCCTGCTCACATGTTTACAGCAGGTCAACAGCATCCGACAAATTCTCATCATACACAAAGTTTGAAGGTTATTTATACACCAAACTTACCACCACCGCCTCCGCTGCAGCTCTTCACTTATCAACCACAAACACATCTACAACATCATCAGAAACCCCCACCGGCCTATGGCACTGCAATAAGTCAAATACGATCTCAACATAATCAAAGTAAGCACCAAGTTACAGGGTCACTGGCAACACAACACCAACATCAAACATTGCATGCACATTTAAGTttacaacagcagcagcaacaacataaTTTGCAGCAACATCAAGCATTGCATCATAACTTAAGAACTCAAATACCACCGCCACAACCACCTCTTCCAGTttctataaaacaaacatatttggaaaaaaatagtgATTTGCCAAATCAAAATAATGCGACAACATCTAGGCATAATCAATCCCAACACAATCATCAACAATCCAAAGTAGATTTGACACATCAGCAACACCAAAAGCAGCAGGAACAGCAAAAACCACAACCCAACTCGGAAAATACACACAATTCAAACGACCATGTTTTTAATTCGGAAGatatttctaataaatcttcattAAAGGTAACAACTTCAGCGACATTGCAAAATCAAAATGTGAACTTACCTTCATATTCACAAGTTTCAATAAGTCCATCCACTGCCTCGGTTTCGATGGCAGCTGTTGCAGCAACAACATTGGGACGACACACTAACTCACCATTTGCTGCATTATTAGCAGCAGCTGCTGGTGCTCCATCTCCTTCAAATACTTCGTCAGTTTTAAGATACGCAGAGTCACCTGTAGCTCATTATTTAGAAAGGGAAAATGGTGATTTTATTGTGCAGGAAACTCCAAAACATATTGTTGAATGTGTTGAAACAGATAGTGGTGAATTTTCTGTCATTGAGCGTATATATCAATCACCACCCAGCGTTTTACACATTCATGATGACGACGAGGATGATGATGAAGATAACTGTGAAAACCGGCTTGAAGATGATCAACATGAAACTACTGATAGTACGTCCAAACAGCACGATTCTAATGACGGCGAaagtaataaaactaaaaacgaatCTGATGAGAAACAAAGAAACACTTCCACAAATTACGTTAAAAGAAATTCTAAGTCTGATGATCGAAATTCGGTTAATAAAGAGATTATTGACTTTGTAAGCATTTCTAGTGACAGTGGTGAAGAAGAAGAATTTATATCTCAAGAATTGAGGGATCATAAAAAAACCACCGAAAAGACTAAACAAAATTCAGAACCCCCCACATCCACAGTCTCATTGCCAGCAACGTCTACCCAATCCTCAACAACAGCGTCATCATCTATATCTCCTAaatcaataacaacaaaaaatggtgATCAACAACTACCAATTTCTACACCATCCACCTCATTACATACTGCTGCTTCTTCTTCCTTAGTTACAGCAAATACAAGCTCTACACAACAAAATGTCGGAGTTACCTGCACTAACAACACTAGTAACCGAAAGAAATCATCTAAAAACACAATTACAGTTTTAAGCGACGTACAATTGAATTTGAATGAATATTTGGATTTGGTTGGAAATATAATTGCTTCGAGTAAAGTGGCGGCGCAGCGTAAAACATTTGCATCCATAGCTCCCATCCCTTTggttaaaattgaaaaagaagagCCTATGGACGAATTCATAACaactaatacaacaacaatgacAGCAACAGCGACATCAAACAATTTCTCAAcaccaccaaattttaaggccaACAAACATGAGACTGAAGAAATAACTGATACCTCTAGCAGTAGTTATagtaaacaaacaacaaacattcataatgtaattttaacaaataaacaagAGCAGGATGAACAAGAAGAGAAGAAACATCAGGTCTTCGTAAGTGCATCTGAAACAGAAACAACATCCATCGCTATTTCAAACGCTTCCACTAGCTTAACGACTACTATAAACTCCAGTCATGTTACCAGTGTTATACGTATGGCCACAACTAGTCAGCGCCAGCAACAAGAACAGCTGCTGCATTCTTTAGACAACAATAAAGACTTCAACGAAGCTGAAGATTTATCACAAACACAACAGAAAGTTCAATCTATAGTAAGTTCTAAAACAGGCCACACGCCTTTGTCTCGTAAAGGTCCGAAAAAACTAGTTATTAAACCAAAATCAACAAAGACTGAGGTTCCGCCAACCACAACCACTGCAAgtaaacaaaaccaaaatcaaataaatgatGAACAAGAATTGCCTACTACTTCTGCTAATGCTCGAcaggaatataaaaaacaaacatcgcTTGAAGACGATCCATTAAATACAACAgatgtaaaagttaaaaatgaacCAATCACGTCAATAACATATGAAAATCTGCCACAGCATTCTCAATATCAACCAGCTACAAGTTTCAGTATTTTGGAGCAGCATCTCAGTTCAAAAGAACCGATTCTTGAGTTTAAGGAGGAAAAGCCTTGCATTACAGAAGCTAATTTGCCATCATCGTCAATCATACAAGAGATGAAGGCAGAAAATAATGTAAACGACGATGCACGTGTTCTATATGATTTTGCCAATTCCAAGAAATCACAACATGAATCGCCAGCAACTTTTCCATCTTCGAAATCGCTTTTTTCAAGCAAGCTAACTTGCGCTGAGATAAAATCATTCGAAGAATCccaaaacaaacaatttactaaaaaaattaatcatgaCAATGATACATCATCCTCATCGTCATCAACATATTCTTCACACTCAGTAATGGATGCTTCACTGCCACCTGAGGAACAAAATGAAAGTTCAAACACTAATACAATTGCAGCAACAACTGCTCAAACTCAGCATCAAACTAATCAAGTATATtctgattttcattttaattatttgtacaaTAATGGTAGCAATAATGGTGCACCAGCTGGAGCTGAGCAAACCGACATTAAGAATCATCAATTCACTCCATTCTATCAAAATATAACCAACAATAACAACACTATGTTGCTGGAAGAATCTTCTTCTAGTAAAAACTACACAGATTATCAACAACTTCATCATAATCATCAtcttttacaacaacaacatcaatctGCCGGTACGTCACACGATCAATGGTATAACAATAATAACTATCAGGCATCGCAACCAAATGTCACACCAATTACTTCGAATCATTCagctttgaatttaaatattggTTTATCAGTTGATGGAAACACCGCAGCTTTGGATGGTAGCGAAACAagtaaatatttagatttagatACATGTAAACGGGAACAAAACATTGACATAGTTGGTGATAGAGTGACCGTACCACCACCGCCTCCACCATCTTCCTCCACTTCGTGTTCGTTTAATGGTACAGCTGACAACAGTATGGCTGGAATCTGTTCGACGGCAGTCATTTTAAATATACGAACAGATGAGAAAATGCCAGCTAAAGGTGAAATTTCCGAACAAGAAAGCAATTGCGATATTGATAATTCGTGGAGTCAAccgATGTACGGCGATATTTCGGCtcgtttttttaagacaactttTCCAGGCATCTTTCCTCAAGATAACGGATGGAATCATGAAGAATATTTTAGTGTACAGGATTTAAGTGCTTCAACAACTGCTCAAGCCAGCACCAGCAATAGATTGAAGagcTTTGAGACAGCAAATAGCAGCAATAACAACAGCAACGGAATCCCAAGTTTTTCCCAAAATTCGAATGACAACTGTAATATTGATGTAATGCCATCAACATCAGCCAAAATACGTAAGAGACGTAAGCGTAGTTCTCAAGATAGTAAAGCATCACACGTAAATGGAAAGCGAACGCAACCGACATCGACTGTAACCTCCCAACAAATGCTAACAGAGCAAAATGAAATGCCTGGGGTAGAGTTTGGTTTCCAACCTCAGCAGctgcaacaacaacatcatttACTACAACATGTGCAACAACCAAGTACATCCACAGCATTTTTGGCAGGACCATCAAATGCTAGTACTGCTTTATCAACTGGTTTTTTGattcaacaacagcaacaacaagaacaaaatCAAACACTACAAAAACAACGCACAAAAGTTTATGAGTGTGGTCATTGTAATGCTAAGTATTCCAAACTTAAAGATCGAAATGCGCACATGGTTGAAATTCATAACTACATACGTCAAAATAGGAGATTAGTGTGTCCCACAACTGGTCTTACCACGCCTCTAAACATTTCTGAAATGCAAGATGGTGCGTTGCCAACATCAAGTTCAGCTGGTAACATAATTACACCTGAATTACAAAATATCGACTGTGTTGGCGATTATAAACAGGGAattgtaaaaatagaaaatgaaaatcCCCAACGTGGTCTGCCTGGAGTAGAAGCCATCAATCCTAACTTAAGTGCTAAATCCGAAATTATGGAAGATGATAAACAAAAGCTAGCTTTGGTACccataaatacaacaaattcTGATGCTCTTGAATACGAAACGAAACCACCAACTAATAGTTTGCCATTGTCGCTAACAACTCCCACCAGTAAATTAACAACACTGTACCGCATGCTTGTATCATTTAATATGACAACATTAAAGCAACACCAAAGCCTTACCGAAATTGATGAAAATCTTATCAAATCATCAATATTCTTTTGTTATATATGTcgtcaaaattttaattcagtaAAATTGTATGATGCTCATTTGACTGAACATCCAGCTGAATGTTTTACATGTGGAAAAAAATTCCAGCGatggaaaaatttttctttgcatTTGAAACGACATTTAGGTTGGAAGGAATTCGGTTGTACAGTGtgcgataaaaaatttgttgttcgaAGTGCTCTCGTCGAACATATGCGCATGCATTCCGGACTATCCCCGTTAAAATGTAAAGTTTGTGGTAAACACTTTAAGCGCTATTCAAACTTAACTCAACATCGAAAGCGGcacacaaaacaaattattcGTAGAAAGGAGTATGTATGTTATTGTGGGGAAGTTCTACCATCTAAAGCACGTTTCTTGTGGCATAAGGAAACTCACGATTCAAAACCAAAATGCTGTCCGCATTGTTGTGACCGTTTCGTACACGTCAACTCATTGCGAAGGCACATCCGCCTCGCTCATTCTGATAAATTCGATTATACCGAACCAATGGAGTGCCCAATATGTAAGCAAATATTTGCTAAGGCCTCTATGAAAGCGCACATGGCAACACATTCAACAGAAACACAATATGATTGTGCAATTTGCAGCAAGTCTTTCTCAAcaaaatggaatttaaaaattcattcttGGGTTCATGCTAATCGCACCGCTAAACCGTTTAAATGTGAACACTGCCCTAAGGCATTTGTGCGCGAGGTTGACTTTAAGAATCACATGAATTCTCACAAACAAATCAAACCGTACACTTGTGAAGTGTGTGGATGCAAGTTTATACGCAAATACAATTACATGCGTCATAGAAGAGAGCATCATGGCAATAAGAAGTATACCTGTGATCTATGTAAAAAGTCGTTCCATCGCCACTACTATTTAATCGAGCACAGACGAATTCACACCGGCGAGCGACCTTTTCAATGTTCGATATGTGGCAAGAGCTCAACAACCAAAACTAATCATAACAAACACCTAAAAATCCATCATTCACGTGATCCATTTACAGTGGAAGTTTAA
- Protein Sequence
- MAENVQCPVCTLYLHAGMNLSDHLETHPKEQVIRALVQLTISGTGIGITSSNTLASVLGGESSLGNATKKSSADLEEKPLSSIKGNDLNKSSADNSSSDNLSNSVSNYSLSNQSVNSSQNSNKSNFSDTKIEQHNENEQDKISTSSSIVPIKTAVKSETTNSVAMTKNNLAGIENMSQGFAKQNFNQAILGSNLTNENHSHHRKSLELINAANSVHNNFTAFGGNARFEHQQRDGVNNQNQLSTLPHMPPPPPPPSTQNQHSGQHQEVGGRGISPTGSSGTFHSIQPQQLPPPPHQTSSHLGHLSSGLRPAHMFTAGQQHPTNSHHTQSLKVIYTPNLPPPPPLQLFTYQPQTHLQHHQKPPPAYGTAISQIRSQHNQSKHQVTGSLATQHQHQTLHAHLSLQQQQQQHNLQQHQALHHNLRTQIPPPQPPLPVSIKQTYLEKNSDLPNQNNATTSRHNQSQHNHQQSKVDLTHQQHQKQQEQQKPQPNSENTHNSNDHVFNSEDISNKSSLKVTTSATLQNQNVNLPSYSQVSISPSTASVSMAAVAATTLGRHTNSPFAALLAAAAGAPSPSNTSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVETDSGEFSVIERIYQSPPSVLHIHDDDEDDDEDNCENRLEDDQHETTDSTSKQHDSNDGESNKTKNESDEKQRNTSTNYVKRNSKSDDRNSVNKEIIDFVSISSDSGEEEEFISQELRDHKKTTEKTKQNSEPPTSTVSLPATSTQSSTTASSSISPKSITTKNGDQQLPISTPSTSLHTAASSSLVTANTSSTQQNVGVTCTNNTSNRKKSSKNTITVLSDVQLNLNEYLDLVGNIIASSKVAAQRKTFASIAPIPLVKIEKEEPMDEFITTNTTTMTATATSNNFSTPPNFKANKHETEEITDTSSSSYSKQTTNIHNVILTNKQEQDEQEEKKHQVFVSASETETTSIAISNASTSLTTTINSSHVTSVIRMATTSQRQQQEQLLHSLDNNKDFNEAEDLSQTQQKVQSIVSSKTGHTPLSRKGPKKLVIKPKSTKTEVPPTTTTASKQNQNQINDEQELPTTSANARQEYKKQTSLEDDPLNTTDVKVKNEPITSITYENLPQHSQYQPATSFSILEQHLSSKEPILEFKEEKPCITEANLPSSSIIQEMKAENNVNDDARVLYDFANSKKSQHESPATFPSSKSLFSSKLTCAEIKSFEESQNKQFTKKINHDNDTSSSSSSTYSSHSVMDASLPPEEQNESSNTNTIAATTAQTQHQTNQVYSDFHFNYLYNNGSNNGAPAGAEQTDIKNHQFTPFYQNITNNNNTMLLEESSSSKNYTDYQQLHHNHHLLQQQHQSAGTSHDQWYNNNNYQASQPNVTPITSNHSALNLNIGLSVDGNTAALDGSETSKYLDLDTCKREQNIDIVGDRVTVPPPPPPSSSTSCSFNGTADNSMAGICSTAVILNIRTDEKMPAKGEISEQESNCDIDNSWSQPMYGDISARFFKTTFPGIFPQDNGWNHEEYFSVQDLSASTTAQASTSNRLKSFETANSSNNNSNGIPSFSQNSNDNCNIDVMPSTSAKIRKRRKRSSQDSKASHVNGKRTQPTSTVTSQQMLTEQNEMPGVEFGFQPQQLQQQHHLLQHVQQPSTSTAFLAGPSNASTALSTGFLIQQQQQQEQNQTLQKQRTKVYECGHCNAKYSKLKDRNAHMVEIHNYIRQNRRLVCPTTGLTTPLNISEMQDGALPTSSSAGNIITPELQNIDCVGDYKQGIVKIENENPQRGLPGVEAINPNLSAKSEIMEDDKQKLALVPINTTNSDALEYETKPPTNSLPLSLTTPTSKLTTLYRMLVSFNMTTLKQHQSLTEIDENLIKSSIFFCYICRQNFNSVKLYDAHLTEHPAECFTCGKKFQRWKNFSLHLKRHLGWKEFGCTVCDKKFVVRSALVEHMRMHSGLSPLKCKVCGKHFKRYSNLTQHRKRHTKQIIRRKEYVCYCGEVLPSKARFLWHKETHDSKPKCCPHCCDRFVHVNSLRRHIRLAHSDKFDYTEPMECPICKQIFAKASMKAHMATHSTETQYDCAICSKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVREVDFKNHMNSHKQIKPYTCEVCGCKFIRKYNYMRHRREHHGNKKYTCDLCKKSFHRHYYLIEHRRIHTGERPFQCSICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -