Pobe017131.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phasia obesa
Gene Symbol
salm
Assembly
GCA_949628195.1
Location
OX451216.1:72326552-72351431[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 6.9e-06 0.001 21.0 0.9 1 23 535 557 535 557 0.98
2 7 1.4e-05 0.0021 20.0 2.1 1 23 563 585 563 585 0.98
3 7 0.023 3.5 9.9 1.5 2 23 947 968 946 968 0.98
4 7 9.7e-08 1.5e-05 26.8 0.5 1 23 974 996 974 996 0.98
5 7 0.0003 0.045 15.8 2.3 1 23 1006 1028 1006 1028 0.98
6 7 0.05 7.6 8.8 3.1 2 23 1396 1417 1395 1417 0.97
7 7 3.8e-08 5.8e-06 28.1 1.3 1 23 1423 1445 1423 1445 0.99

Sequence Information

Coding Sequence
ATGAAAACTATTTTATCAACTGTTTTGTGTGAAATGAGAAGTGACTTTAAGGAAACCCATCAAGAAACCATTAATAAAATGATACAATTTGGTACCGTCAAATATGGaattgttaaacaattaaaagatcGTGCTAAAAGCACAGATAAagATTCAGCCAGTGATCATGAGGAAAATGGTACATGTTCACCTTTGGCTGCCACAACCGCCAATGAAGATAGTGATTGCGATAGAGCAGAATTAACTCATATGGACGCAAGTAATGAacatgttaataaaattaacacaaCGCCCGCAGATGACGATAAACAACAGACTTCTGCAGCAGTCTCAGTAACAGAGGAAGAAGAtcttaatcataataataacattgtaatgcCTTTGGAAGAACAGGTACAACAGGAACAACTGCAACAGCAGCATCATCATCAGCCGGAGTTAAAGATACAATCTCCAACACAAATAGAAGACTTAAATGAGGCTTTAACACTCTCCAAAACATATCCAAAAGATAAAGAATTTCCGTCACCCACTCCACCCGATCTCAATGAGAGTCAAGAACCTTTAAGAAAAGCTCAAGAAACTAGTGAAGAAGTTACTGAAATCGAGAAGTCTCCACAACACGAAGAATTAGAAAGCTTAAATACAACCGATGATATGTGTTTGACTTCCAGTAAATTGGCAATATCCAACAAGGATCAGTTGAATGCAGAGGTAGGAAATGAAGCCAAGAAAACTTCTCACACGGAGTTGGAAGAAAGTGAAGCAGCAGAAAATGTTGAAAAGGCACTTAATAAAGATGTGGCAATGGATATTACACAGCCTGAATCTACCACACCGCCTGTATCTGCCTCCTTAGCCCAACAGTTTGGTGCTGCACCTGTTAACATAGAAGCTATTAAGAATATGCAATTGGCTATAGCCCAAGTGGCTGCTAAAACTATTGCTAATGGTGCTTCTGGTCAGGATAATGAAGCTTCCATGAAACAGTTAGCCTTCTTGCAACAGACTCTATTCAATCTTCAACAACAGCAACTGTTTCAAATTCAACtaatacaacaactacaatCGCAGTTGGCCATGAATCAAACGAAGACAGGAGAGGAGGCCAATGAAATGCAAGAAGAGGACGAAGAAGAGGGTGAGAATGGTGAAGAAGATACTTATGAAGAGGAAGAGCGTATAGCTCAAATGGAATTAAGGCAGAAAGCTGAAGCTCGCATGGCAGAGGATAAAGCCCGGCAGCATTTAATTAATGCTGGTGTGCCTCTGGATTCACTTAAAAGAAAACGTGACGCAGATACCAGCGAAGAAATGGACGTTCCAGCTTCTCGTCGCATGAGTGTTGACAAGAGCTCAAATTATGCTTTGGATAAACTAAAGGATATGGAAAACCGGCCATTGCCTTTTGGTTCGAATTTAGCCTCTTCTATTATAACTCACCACGATGACATGCCTGCACCAAATTCCTTGGACTTACTACAGAAGAGAGCCCAAGAAGTATTGGATTCGGCATCTCAGGGTATTTTGGCCAATAACATGGCTGATGAATTTGCGTTCAAAGAAAAGAATGGTAAGGCAGGCAATGAGCCtttttttaaacacagatgTCGCTATTGCGGCAAAGTCTTTGGTTCTGATTCTGCCTTACAAATTCATATCAGATCTCATACAGGTGAACGACCCTTCAAGTGCAATGTTTGCGGCAGCAGATTCACGACCAAAGGCAATTTAAAAGTCCACTTTCAAAGACATGCCCATAAATTTCCTCATGTACCTATGAATGCCACACCCATACCAGAACATTTGGACAAATTTCATCCGCCTCTATTGGATCAAATGTCACCCGACAGTTCACCCAGTCATACACCTGCCGCTATGCCACAACAAATGCCAAGTCAAATACcaccaattaatttttcagGAGCCTCCAACAATTTTCCAGGACTAGCAAATCTTTATAGGCCTCCCATGGATATTCTCAAGTCATTATCGTCTTCTTCTTCAGGAACAGGATTCAACAATCCTTTCTTCTCTCAGGTTCCTAGTAACTTAGGAGAAGCAGCAGTGCAGGCTCAGGCAGCTGCACaagcagttttaaataaaaatcaagacaTTGCAACTGATTTGAGTAAAACCTCCAAGCCAAGTTCTCCCGTTAATACACCAATCAAATCAGAGATCTGCGAGGAAAAGGAGGACGAACAAAAGGAAACAGCATCTAAAACAATCTCTGCAACGGAAACTCCCAAACTATTATCACCTTCACCTTTGAACAtcaaaatcaaagaagaaaaagatGATTGTGAAATTGTAGAAGAGAGAATAGAAAGTCCCCCACCAGTTCAATCCACAACCAGCCCCGATGTTTCTACACACTCACCTTTAACGAATTCCCTACCCCAAGTACCTAATAGTCCGCCTGTGCCCACATCTAAGCCACCCACCACACAACAACTACCGCCAGTAGTACAACCTATACAACCACCCGCCATTATGCATCCCCAACCTTCACCGGGTTCGCTACATCATTTGGAGCATTTGCCAACTCCAGGGCAATTGCCTCCATCTATGTATCATCGTGATGACTTTTTCGCTGAGCGTTTTCCTCTGAACTTTACCAAAACTTTGTCGCCTGAAAGACATTCGCCCATAAGATCACCCGCACACTTACCACGAGCTCCCTTCTTTAATCCAATGAAACCACATGATATGGCTTTATTGCCCCGTCCGCACAGCAATGATAATTCTTGGGAGAATTTCATAGAGATTTCGAATTCTTCAGAAACCATGAAGCTTAAAgaattaatgaaaaacaaaaaaataaccgaTCCAAATCAATGTGTGGTTTGTGATCGCGTTTTGTCATGTAAAAGCGCTTTGCAAATGCATTACCGCACTCACACGGGCGAAAGGCCTTTTAAATGTCGCATTTGCGGTCGCGCCTTTACAACTAAAGGCAATTTAAAGACTCACATGGCTGTTCACAAAATAAGACCTCCAATGCGTAACTTCCATCAATGTCCAGTGTGTCATAAGAAATATTCCAATGCTTTAGTGTTGCAACAACACATACGGCTGCATACTGGAGAGCCCACAGATTTGACTCCTGAACAGATACAAGCTGCCGAGATTCGCGATCCCCCTCCATCTATGATGCCAGGAGCCTTCATGAATCCCTTTGCTGCAGCCGCCTTTCACTTCGGCATGCCTGGTGGTCCTGGTATGCATCCTTTGGGTGGAATTCATAATGGAATGGGTTCAGAGTCATCCCAGGGTGACTTTGATGATCAAATGGATTGCGGAGACGACTTTGATGACGACATGTCCTCTGATCACATGTCGAATAGCAATGACTTGGAGCCAGGTAGTGAGAGGCCAAAGTCTACAGATGATTTCAAGGGTTTGTTATTCGAACAGAAACTAAGAATAGACCCAACTGGCGTGGTTAATACGAATCCCAGATCTCAATCGGTTATTTCCAACCCAAATTCAATAAATTCGCCACCTACCAGCCCAACATCAGCTACAAAACCTGTAAGTTCTACACGAGCTACTTCTCCGGCTAGATCAGAAATGTCTCAAGGAGCTTTGGACTTAACTCCTCGTGCAGGACCTTCTTCCGCCAACAGCAGCATAAGCGCCATATCACCACTACCTACAACCGCCTGCAAACGATCACCCTCTCCAATTAGTAAATCACCAAAATTACCACAAATCAGTCCCTCAGCAGTGATGCCACCCACATCAGCTGTAGATTGTCTGCCACCTAGTTTACACCACCACTTGcagcaacaacatcaacaactgATGCAACAACAAGCTGCTTTAGCGGCCGCCCAACATCATCAACAAATGCAACACAATGCCGTTGTCGCCATGCACCAAGAACAACTAAGACGAGAAGCTGTTGCACATGCGCAGCTCTCACCAAATGTTCCGCAATCAGCCTCACAGCAGCAACCATCAGGACAATTGGCTACCTCACCACAAATACCACATCCCCCAGCTCCGAATCCACTGATGACAGCTGCCAGACCTCCATTTGGCATGTTTCCAAATCTGCCGTTATTTCCACCAGCTTCCACGCAAAATATGTGCACGGCCATGAATTCGATTGCACAGTCTGTTATGCCGGCGGCACCGTTTAATCCTTTAGCTCTATCGGGAGTCAGAGGCAGCACTACTTGCGGCATTTGTTTCAAAACATTCCCCTGCCATTCGGCTTTGGAGATTCATTATAGAAGTCATACAAAAGAGAGACCATTTAAGTGTAATATATGTGATCGTGGCTTTACAACAAAGGGCAATTTAAAACAGCACATGCTAACCCACAAAATACGTGATATGGAACAAGAAACTTTTCGAAACAGAGCAGTCAAGTATGTAAGTCTTCCAAATCGTTAA
Protein Sequence
MKTILSTVLCEMRSDFKETHQETINKMIQFGTVKYGIVKQLKDRAKSTDKDSASDHEENGTCSPLAATTANEDSDCDRAELTHMDASNEHVNKINTTPADDDKQQTSAAVSVTEEEDLNHNNNIVMPLEEQVQQEQLQQQHHHQPELKIQSPTQIEDLNEALTLSKTYPKDKEFPSPTPPDLNESQEPLRKAQETSEEVTEIEKSPQHEELESLNTTDDMCLTSSKLAISNKDQLNAEVGNEAKKTSHTELEESEAAENVEKALNKDVAMDITQPESTTPPVSASLAQQFGAAPVNIEAIKNMQLAIAQVAAKTIANGASGQDNEASMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLAMNQTKTGEEANEMQEEDEEEGENGEEDTYEEEERIAQMELRQKAEARMAEDKARQHLINAGVPLDSLKRKRDADTSEEMDVPASRRMSVDKSSNYALDKLKDMENRPLPFGSNLASSIITHHDDMPAPNSLDLLQKRAQEVLDSASQGILANNMADEFAFKEKNGKAGNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAHKFPHVPMNATPIPEHLDKFHPPLLDQMSPDSSPSHTPAAMPQQMPSQIPPINFSGASNNFPGLANLYRPPMDILKSLSSSSSGTGFNNPFFSQVPSNLGEAAVQAQAAAQAVLNKNQDIATDLSKTSKPSSPVNTPIKSEICEEKEDEQKETASKTISATETPKLLSPSPLNIKIKEEKDDCEIVEERIESPPPVQSTTSPDVSTHSPLTNSLPQVPNSPPVPTSKPPTTQQLPPVVQPIQPPAIMHPQPSPGSLHHLEHLPTPGQLPPSMYHRDDFFAERFPLNFTKTLSPERHSPIRSPAHLPRAPFFNPMKPHDMALLPRPHSNDNSWENFIEISNSSETMKLKELMKNKKITDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGAFMNPFAAAAFHFGMPGGPGMHPLGGIHNGMGSESSQGDFDDQMDCGDDFDDDMSSDHMSNSNDLEPGSERPKSTDDFKGLLFEQKLRIDPTGVVNTNPRSQSVISNPNSINSPPTSPTSATKPVSSTRATSPARSEMSQGALDLTPRAGPSSANSSISAISPLPTTACKRSPSPISKSPKLPQISPSAVMPPTSAVDCLPPSLHHHLQQQHQQLMQQQAALAAAQHHQQMQHNAVVAMHQEQLRREAVAHAQLSPNVPQSASQQQPSGQLATSPQIPHPPAPNPLMTAARPPFGMFPNLPLFPPASTQNMCTAMNSIAQSVMPAAPFNPLALSGVRGSTTCGICFKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYVSLPNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00045570;
90% Identity
-
80% Identity
-