Basic Information

Insect: Phasia obesa
Gene Symbol: -
Assembly: GCA_949628195.1
Location: OX451215.1:199247267-199261453[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0064 0.97 11.6 0.5 1 23 319 342 319 342 0.95

2 12 2.4e-06 0.00036 22.4 1.1 1 23 347 370 347 370 0.97

3 12 2.5e-05 0.0037 19.2 4.5 1 23 375 397 375 397 0.97

4 12 0.069 10 8.4 5.2 2 23 404 425 403 425 0.95

5 12 0.0015 0.23 13.6 2.8 2 23 433 455 433 455 0.95

6 12 0.039 5.9 9.1 0.8 1 23 461 484 461 484 0.95

7 12 0.0076 1.2 11.4 0.5 2 23 495 517 494 517 0.94

8 12 2.6e-07 3.9e-05 25.4 0.7 1 23 545 567 545 567 0.98

9 12 3.1e-05 0.0047 18.9 3.4 1 23 574 596 574 596 0.96

10 12 0.00023 0.034 16.2 0.2 3 23 604 624 603 624 0.97

11 12 0.011 1.7 10.9 1.2 1 23 631 653 631 653 0.98

12 12 2.4e-05 0.0036 19.3 2.5 1 23 659 682 659 682 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0064	0.97	11.6	0.5	1	23	319	342	319	342	0.95
2	12	2.4e-06	0.00036	22.4	1.1	1	23	347	370	347	370	0.97
3	12	2.5e-05	0.0037	19.2	4.5	1	23	375	397	375	397	0.97
4	12	0.069	10	8.4	5.2	2	23	404	425	403	425	0.95
5	12	0.0015	0.23	13.6	2.8	2	23	433	455	433	455	0.95
6	12	0.039	5.9	9.1	0.8	1	23	461	484	461	484	0.95
7	12	0.0076	1.2	11.4	0.5	2	23	495	517	494	517	0.94
8	12	2.6e-07	3.9e-05	25.4	0.7	1	23	545	567	545	567	0.98
9	12	3.1e-05	0.0047	18.9	3.4	1	23	574	596	574	596	0.96
10	12	0.00023	0.034	16.2	0.2	3	23	604	624	603	624	0.97
11	12	0.011	1.7	10.9	1.2	1	23	631	653	631	653	0.98
12	12	2.4e-05	0.0036	19.3	2.5	1	23	659	682	659	682	0.98

Sequence Information

Coding Sequence: atggAAACTTGTCGTACGTGTGCCAAATGTGATTTTGATAATGAAAGCCAATggtttgatttatttaatgctCCTCGTTGGCAACTGGAAACTCAACGCATACATTTAGAGTTAAATACTTGGAAaataaagATATCGTGTAACGATGGTTTGCCACAAAAAATTTGCACCgattgtttttcaaaattttgcacCGTCTCCTCGTTTCGCTTACAATGTGTGGAGGCACAGACAATTTTAAGCAATATATTCGATAAAATCGATACACAAAGTATACAAGATGAGGAAGTCTTCGAGGGTTTTGCTAATGAACAAGATAATAATACACAAAATGCACAAAATACCGTAACAAGTGCAGCAAACTCAGTAGCAGCAGTTAAAACGGCAGCGACCGCAGCAGAAATAGCACCACATTTGCAAGTAAAGTCAACTGAACACACATTTGAGACAACAACAGAAAAGAACACAACTAGCAGCAATActagcaacaataacaacaacaatatcaaTAATGCGGAAGTAGAAGATATTAataacaacaccaacaacaatattggcaataattttgataataatgaAAATGCCTTCACTAGCAACATCACCACTTTAAATAATAgtgaaataacaacaacaacactacCAGAAACTACCAACGATTTAGACGAAAATGATCTTATAGAAGAACTTATCGACGAACTAGACATCATTGAGGAAATAGCTGAAGAAGACGACGAAGAAGAGAACGACTGCTATAATGAAGAAAATccaacaaatgaaaatattatcttTTCCCACTTAACTGACAACGAAGATGACGATCCTGCatctgataatttaaaaataacatttgaatGTAAATATTGTTACAAATGGAAGAATAGCGtttcagaaaattttcttaCCCAACAAGAGCTATTGGCTCACATCACCAAACTACACAGCTCGGAACAACCCTATAATTGCCCTTATTGCAAGCAAACTTACATGGATGCTGCTTCAAGAACCACCCATTTAAAGGAAGACCACAGTCAAAAGGTGTACGAGTGTGAAACGTGTGGTAAAAAATATgctgataaatttaatttgaaaaatcacATCGAAAAATACCACAGTGGCACCGATTTCGATTGTACGCTGTGCGATAAGAGTTTTTGTTCGAGAAAAAGTTTAAACTATCACATGAAATGGCACAATCCTAAGGAACAATTAAAATGTAGCTACTGCGATCGCTTGTTTATTAACCAAAGACATCTGAAGTGTCATGAGGAGACTCACACGGGATTTCGCAGTCAGGAGGTGTGTTCGTTTTGTGGAAAAAatTTCTTCCATTTAAAAACACTTAGATGGCATATTTATCGACAGCATGGAGGAGAAAAACCATACAAATGCGCCCGTTGTACAGCAGTCTTCACatcatattttgaaaaacgTATACACATGCTCGAAAATCATCTAAATAATCTAACGCTGATCGAAAAAACCGAGTGTATGCTGTGCCACAGACGTTACGACAATGAAGTGGAACTTAGAGATCATATGTTAGAGGATCATAAGGAAAATAAGGGAGCAGTCAAAATAGCCAACAATAAAAGAGTCATTATGAATAAGAAACCAAAAAGCTTTACGGGAATATTTCAATgtgaaaaatgtgataaaagaTTTAATATGAAATCAGCTTTGGAAAGACATATGGCTGTGCATTCGACAGAGGGAAGaCCTCATGCTTGTACCCAATGTCCTAAGCGCTTTAAACGTTCACAAGATATGAAATGGCATTTAAAAACGCATTCCTCAGAGAAACCAAATATCTGTGATGTGTGTGGTAAGGGATTTGCTTTGAAATATGTGTTGACTCAGCATCGCAGAAGTCATGAAgTTTTAGAAAAGAACTTTACTTGTTCCACCTGCGGTCGTTCATATCTCTTTGAGAAGTCTTTGCGTTTGCACGAACGCATACATAGTGGTAAAACTTATTACAAATGTGACTTGTGTGGTGAAAGTTTCGTTACccacattaaatttaaatggcatatgaaaaaaatgcacGACGAGGAAGAAGTGGCTGCTACAAatttaaatcctaataaaaataaacttaacatgGAGCTGCCATTGGACGATTTGGTCAATATTGTTATTACTTAG
Protein Sequence: METCRTCAKCDFDNESQWFDLFNAPRWQLETQRIHLELNTWKIKISCNDGLPQKICTDCFSKFCTVSSFRLQCVEAQTILSNIFDKIDTQSIQDEEVFEGFANEQDNNTQNAQNTVTSAANSVAAVKTAATAAEIAPHLQVKSTEHTFETTTEKNTTSSNTSNNNNNNINNAEVEDINNNTNNNIGNNFDNNENAFTSNITTLNNSEITTTTLPETTNDLDENDLIEELIDELDIIEEIAEEDDEEENDCYNEENPTNENIIFSHLTDNEDDDPASDNLKITFECKYCYKWKNSVSENFLTQQELLAHITKLHSSEQPYNCPYCKQTYMDAASRTTHLKEDHSQKVYECETCGKKYADKFNLKNHIEKYHSGTDFDCTLCDKSFCSRKSLNYHMKWHNPKEQLKCSYCDRLFINQRHLKCHEETHTGFRSQEVCSFCGKNFFHLKTLRWHIYRQHGGEKPYKCARCTAVFTSYFEKRIHMLENHLNNLTLIEKTECMLCHRRYDNEVELRDHMLEDHKENKGAVKIANNKRVIMNKKPKSFTGIFQCEKCDKRFNMKSALERHMAVHSTEGRPHACTQCPKRFKRSQDMKWHLKTHSSEKPNICDVCGKGFALKYVLTQHRRSHEVLEKNFTCSTCGRSYLFEKSLRLHERIHSGKTYYKCDLCGESFVTHIKFKWHMKKMHDEEEVAATNLNPNKNKLNMELPLDDLVNIVIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261270;
90% Identity: -
80% Identity: -