Pobe031989.1
Basic Information
- Insect
- Phasia obesa
- Gene Symbol
- -
- Assembly
- GCA_949628195.1
- Location
- OX451217.1:132636835-132643633[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.18 28 7.0 0.9 1 23 285 308 285 308 0.93 2 13 0.013 2 10.6 1.2 2 23 387 409 386 409 0.95 3 13 8.5e-06 0.0013 20.7 2.8 2 23 733 754 732 754 0.97 4 13 0.0099 1.5 11.0 2.5 1 23 760 782 760 782 0.97 5 13 5.6e-05 0.0085 18.1 2.1 1 23 790 812 790 812 0.99 6 13 0.2 30 6.9 1.0 1 23 818 841 818 841 0.96 7 13 0.079 12 8.2 2.3 1 23 978 1000 978 1000 0.96 8 13 0.0058 0.89 11.7 0.7 1 23 1006 1028 1006 1028 0.96 9 13 0.0064 0.98 11.6 6.8 1 23 1034 1056 1034 1056 0.98 10 13 3.4e-06 0.00051 21.9 0.1 1 23 1062 1084 1062 1084 0.99 11 13 0.0003 0.046 15.8 4.8 1 23 1090 1112 1090 1112 0.98 12 13 0.00029 0.044 15.8 4.0 1 23 1120 1142 1120 1142 0.99 13 13 0.0001 0.015 17.3 0.5 1 23 1148 1171 1148 1171 0.97
Sequence Information
- Coding Sequence
- ATGATCAACACTTTGTTGGAGCATGTGCCCATCAAAATGGAAGTTAAAGAATTGGATGAGGCTACAGACCATTTAGCGAATGATGAAACGGCCACTAACTTGGCAAAAGATGATGATAAAATTGATGAGACAGATGAGGAATCAGCAgaagatgatgatgacgatgacgaaTATGATGAAGAGGATGAAGATGAAGAAGAGTCAGATACGGAAAGTGATGCTCTGGAAATTGAAAAGGAAGCCACCATGTTAATAAGTAGTGATGAAGAGGCAGAATTAGAGGCACAAAGAATACGTTTTCCCGACATAGCTGTCCCAAAGAAGTCACGCAAAGATTCCAATAAATCTTCACGCAGCTCTTCCAGAAACAGCCAAACCAGTAATACATCCTCTAAGCCACAAATTACTTACGAAATTGTACATAAGAAAAAAGACACCGTTGAGGAAACACACAAGACACAAAGAATTTCAACTCGCCTTAAGAATTcagagaatataaaaattttggagaGCTTAAACAATGagaataataacaataacaacaacaatacacaaacactgttaaaaaataaaacagagaacaagaaattggaaaataataaaaataaacaagacgaaacaagcaaacgtttggataacaataacaaaacaacaGACCAGAGCCACAAAAATTGCGAAAACAATcgtaatatagaaaatttactcAAATCCCCAGTTAATGCTCCCGGACAAATAAGTCGCCGTGGCAGTAATAATTCCACCTGCAGTGTAGCTTCTACGGTGGCTTCTGACAGCGCCGAAACAGAATCCTGTGGCAAtatttatgtctttaatttGCAACAGAAACTTATATTTAATTGTGaattttgtgatttaaaatATGGTGATTTGGAAAACTTTGGACGTCACCTACACGAGATCCACAAACTTTTCAACTTCGACGAAGATCCAGAAAAGGAAAATGCTCCGCGTAATTTACGCAAAAGCAATCGTATGCCTAATAGTACGCCAAAAAATTCCGCCTATGTTAAAAAAGAACCTTTACAGTGTTTAGACTTGTTGGCTGAACCACCTGTTGCTTTGCCGCCTTCGGTTTTAGCAGAACCACTAGATTCGTGCGGCAATGTTTTTATTCTAAATCATcgtaaattgtttttagtttgtggTTATTGTGAGTGTAAATATGCTAATTTGGATTTGTTTGAGAAACATTTAAGGCAACAACATCGTATTTTTGAGGGTTGCCGCAATGAGGTGAATGTGGTGCCAAAGGTGGAAGTAAAGGAAGAGGTATTTATTATTACCGAAGTTGTGGAGaaaccacccgatataatagCTCCTCAAGCTATGGTGGCAATACCGGCCGAAATTCCTTTAAATATAAGTATTACGCCAGAAAATGAGGCCGAAACGGTGGCTGCTTTAGAGGAAACCAGTGCGGAAGAGGAAGTAAACAAGGATCAGGCGCCTATATCCTCCTCCCCCTTAGAACCAAGTACCCCAGAAGTTGCTTTAGATAAGAAAGATGAAAATCCAGTAGAAGTTAGTGAAGTTTCAAGTATAAAGGAAAACGAAAAATTGTGTGAAGTtgcaaataatgaaaaaagtgcGCTTAAGAAAACCAGAAGTAAAAGGCGTTTTTCACCCGTTAAGTCTCCCAATACTAAATCTCCCAATAAACGACCTAAAAGGAATACAAGGAATAATACAAAAATCCAGAAACAGtctaCAACCACCGACAAAGAAGACAAAACTCCCATAATTAATTTAGAAACAGCTCCAATTATTGAAGTAGAAAAAGTCACAGAAACTTCAAAAGCAAATGCCGACACGGAAATATCTACACTATCTGAAGCAGAACCAATAAAAGACACACTTCCAGAAACAACACAACCCATGGAAATAGAGATatgcaaaaattcaaacgaaTCTGAAATAACAGAATCCCTAAAAATATCTGAAACCAGAGAAACTAGAAAATCCACAAAAGCAGCACGAAACAAAAAACCAACATCTCCTCAATTAACTAAAGAAACGAGAAAAAGAACAAGAACTGTAGAATCCAAAAAACAATCAACCCAAGAAACAAATGCAACTAAAGAAACCAGAAAGTCTACAAAAAATGCTGAAACCAAGAAAGTCAAACAAGACTTGTCTGAAATTGACATTGAAAAAGCCACCGTTCAAGGTAAATTAAAGTGTTCGATGTGCTCCAAGAAATTTTCGCGCAAAGATACTTTAAAGATTCATGAACGAACGCATACCGGCGAAAAGCCTTACGAGTGTGAAGTTTGTCACAAAAAATTCGGAGCCAGAGCAAATCTCTACATGCACAAAAAGTTTCATATGGGAGactcgtataaaaaatataaatgtgaaatttgCGACAAGAAGTTTTTCCGCAACAATGATCGCAAAGTACATATGCTATCTCACTCCAGCGAGAAGGGATTTAAATGTGGCATTTGTATGCGTGGCTACTCCTCAAAACTCAGCGTTAAAAAACATTATGAAAGAGATCATAAAACGGAAGTACCAGCCAAGAGTAAAAAGAAAACGGCTCGCAAAGAAAATTTGATAAGCACTAAAGTGGAAGAAGACACTATTCCACCAATACAATTGCCCACAATCACAGCATCTCTCATTGAGCCAATGCCGGAAACACCCTTGCCCTTGCAAGAAAACAATGAAATGGATGATCTTAATGCAGATCCTGTCGATGATATTATTCAACAGTTACAAAATGAAATGGTACAAAACGAACGTGATAATGGCGAAGCGAATGCAGTTACCTACACCATAAACACGCTGCAAGGTAGTGAAGTATCTAATGAACCCTTAGAAATGAGACCGATAGACCTTGGGGCTCAACTCAATGAAGTCGACAGCACAGAAGATGTCAAACCAACacttttgaaaattgttaaacGTTTTTTCTGCGACATGTGTCCTCGAACATTCGAAAAGCACATACGTCTGGTCGAACACAAACGTTTGCATACGGGTGAAAAACCTTTTGCCTGTGATGAATGCGGCAAACAGTTTCGTATACGCATGCGCCTTAACGAACACAAACTGCGACATTccaaagaaaagaaattcaaatgtGACGTCTGTCAATTGGCCTGTTGCACTAAACAGGACCTTAATCTGCACATGCGTCATCACACTAACGATCGCCGTTACCAGTGTACCATGTGTCCCAAAGCATTTGTGCGTGGTTCCGATTTAAAAATACATGTGCGTGTGCATACCGGTGAGAAGCCCTATGTATGCGACATATGCCACAAATGTTTCCGGGCCAATCAAAATCTCAGCGTGCACAAGAAATCGCACATGGGAGAGGCATCTAAAACCTATAAATGTGAACATTGTGAAAAGAAGTTTATGCGCAACATAGATCGCAAAGTGCATATGAGATCGCATACGGGTGAAAAGCCCTACAAGTGTGAGATTTGTCAACGTGGCTACTCTTCGAAATTTAATGTACGAGCTCACATTGAAAGAGATCACATATCGGCGAATGGTGTGGGTACTCCACCAAAGGGTAAGAAGAAACCCGGACCAAAGCCTAGAGCCCTAAGGGAAGagttagaaaaacaaaagaaactaaTCGAGGAGTTACAAAATCAACTATTGCAACAAATCAAAACCGACGAAAAGATCATACCATCCGAAGAAGAAATGCAGGATAATTTGCAAGATTCTACTATAACAGCCACCTCTCCTCTTACCACAAGCTCAACAATTGATCCCATACAAAGTGCTTATGAATTGCTGAACAAACTGAAATCATCAACAACTACCTCTAAACCCTTGACTGTAATTCCATCGCCACCACCTATGGCCGAACCACCCTCTAATCCCTTTACAAAGAGCAAGAAAGACACAACAAATTTACTACCTCTTACTATAACACAAAAACTAGAACAATCCTCACCAGCACCTTCCTCTTCATCCACTTCCACATCTTGCCTTACAACACCCTCACCACCCAAGACCACCGCCACCAAGGTTGTGTCACAAAAAACCTCTTTGGGTATACAACAAGTTTCGGTTACCGTTTCGATGCAAGTCGAGAATGTAACACCAAATAATACCACCACCTCCGAAAAAGAGAATGCAGGCATTTTAACAACCAGCTCCAGCAGCACGACCAGCgttaaaaaggaaagaaaaattaCTAGTTATTTTACGGTAGTGGGACAGAAAGCggaagtttaa
- Protein Sequence
- MINTLLEHVPIKMEVKELDEATDHLANDETATNLAKDDDKIDETDEESAEDDDDDDEYDEEDEDEEESDTESDALEIEKEATMLISSDEEAELEAQRIRFPDIAVPKKSRKDSNKSSRSSSRNSQTSNTSSKPQITYEIVHKKKDTVEETHKTQRISTRLKNSENIKILESLNNENNNNNNNNTQTLLKNKTENKKLENNKNKQDETSKRLDNNNKTTDQSHKNCENNRNIENLLKSPVNAPGQISRRGSNNSTCSVASTVASDSAETESCGNIYVFNLQQKLIFNCEFCDLKYGDLENFGRHLHEIHKLFNFDEDPEKENAPRNLRKSNRMPNSTPKNSAYVKKEPLQCLDLLAEPPVALPPSVLAEPLDSCGNVFILNHRKLFLVCGYCECKYANLDLFEKHLRQQHRIFEGCRNEVNVVPKVEVKEEVFIITEVVEKPPDIIAPQAMVAIPAEIPLNISITPENEAETVAALEETSAEEEVNKDQAPISSSPLEPSTPEVALDKKDENPVEVSEVSSIKENEKLCEVANNEKSALKKTRSKRRFSPVKSPNTKSPNKRPKRNTRNNTKIQKQSTTTDKEDKTPIINLETAPIIEVEKVTETSKANADTEISTLSEAEPIKDTLPETTQPMEIEICKNSNESEITESLKISETRETRKSTKAARNKKPTSPQLTKETRKRTRTVESKKQSTQETNATKETRKSTKNAETKKVKQDLSEIDIEKATVQGKLKCSMCSKKFSRKDTLKIHERTHTGEKPYECEVCHKKFGARANLYMHKKFHMGDSYKKYKCEICDKKFFRNNDRKVHMLSHSSEKGFKCGICMRGYSSKLSVKKHYERDHKTEVPAKSKKKTARKENLISTKVEEDTIPPIQLPTITASLIEPMPETPLPLQENNEMDDLNADPVDDIIQQLQNEMVQNERDNGEANAVTYTINTLQGSEVSNEPLEMRPIDLGAQLNEVDSTEDVKPTLLKIVKRFFCDMCPRTFEKHIRLVEHKRLHTGEKPFACDECGKQFRIRMRLNEHKLRHSKEKKFKCDVCQLACCTKQDLNLHMRHHTNDRRYQCTMCPKAFVRGSDLKIHVRVHTGEKPYVCDICHKCFRANQNLSVHKKSHMGEASKTYKCEHCEKKFMRNIDRKVHMRSHTGEKPYKCEICQRGYSSKFNVRAHIERDHISANGVGTPPKGKKKPGPKPRALREELEKQKKLIEELQNQLLQQIKTDEKIIPSEEEMQDNLQDSTITATSPLTTSSTIDPIQSAYELLNKLKSSTTTSKPLTVIPSPPPMAEPPSNPFTKSKKDTTNLLPLTITQKLEQSSPAPSSSSTSTSCLTTPSPPKTTATKVVSQKTSLGIQQVSVTVSMQVENVTPNNTTTSEKENAGILTTSSSSTTSVKKERKITSYFTVVGQKAEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -