Pobe032929.1
Basic Information
- Insect
- Phasia obesa
- Gene Symbol
- -
- Assembly
- GCA_949628195.1
- Location
- OX451218.1:7232658-7235746[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3e-05 0.002 20.1 0.8 2 23 105 127 104 127 0.96 2 13 0.0015 0.22 13.6 2.0 1 23 133 155 133 155 0.93 3 13 0.00088 0.13 14.3 2.2 1 20 161 180 161 183 0.94 4 13 1.1e-05 0.0017 20.3 1.3 1 23 189 211 189 211 0.98 5 13 0.0089 1.4 11.2 3.9 1 23 217 239 217 239 0.99 6 13 0.00044 0.067 15.3 0.5 2 23 387 409 387 409 0.96 7 13 0.00034 0.052 15.6 1.0 1 23 415 437 415 437 0.99 8 13 4e-05 0.006 18.6 0.6 1 23 443 465 443 465 0.98 9 13 2.7e-06 0.00041 22.2 2.7 3 23 473 493 471 493 0.96 10 13 0.031 4.7 9.4 4.6 1 23 499 521 499 521 0.98 11 13 1.3e-05 0.0019 20.1 0.1 1 23 526 548 526 548 0.99 12 13 0.00084 0.13 14.4 5.8 1 23 554 576 554 576 0.98 13 13 0.0001 0.016 17.2 4.0 1 23 582 605 582 605 0.98
Sequence Information
- Coding Sequence
- ATGGATGTTGGATTGGAAACTGACGAATATAAAAGTAGTGATGAAAATACAATGGAATctttacctaaaattaaagaTGATTTGATTAGTTCTTTGGATGATATTGCAATAGATAAATTGGCTGAAAATAAAGTAGATATAGATACATCATTTGAacataatcataataaaaatcgAGAAGAATATTTGAAACCAAAGGAAGAcggtaaacaattattaaattttaagttgcaaAGTACCGAATTTAGTAACAAAAACTTACTAGAAAAAACTCCATCTGAAAACGTTGCGAAGACATCGATTGATACAAAGCAGtgtaaaatatgcaataaaatatttaaacaaccaCAAGGTCTTGCCTCACATATGtctaaaactcattttaagAAACATTTATATCAGTGTCAAAAGTGCGATAAAGGTTTTAGTGTGGAGGAGCTCTTCATAAGACACTGTAATATACATTTAGGTATTAAACCATTCCCGTGTACCCAATGTGATAAAGCTTTTGAGACCAATAGTAGATTAAGTCAACATTTACTTTGCCATTCTAAAGAGTCATGTTATTCATGCACCATTTGTGACAAAAAGTTTTACCGCATTGATGTTTTAAAACAGCATATGCTACGCCATGACGATGAGAAACAATTTCAATGTTCAAAATGTACTATAACTTTTAAGTCTTTTGCCGATCACATAAAACATATAAAGACACATAAAACTGAAAAGAACCACGATGACAAAATTTGTGATACACAACATTTGTTAGCATCCACATCCAAGCAGCAAATTGTACAAACGGAAGAGAAACTATTTAAATGTGATCAATGTgataaatgTAATGATCTCCGAAAACATACAAGACGCATGCATAAGATTAAAGATTGTGAACTTGAGGACGAAATTACAATGGAGGGTATAAATGATAATAAAGAAGATTTAGAAATGCCTTtggaacaaattttaatagaattaaaacCTGAAAATAAAGAAGATAGTGAAAATTCAGAAATTGAAGATGTAGATAAATTCAGTGTAAAACTTGAAGAAAATAAAGACggAACAAAAATGGAAAAGGAATTAACAAAACCCCGTAACCCTCTCTTGGATAATAGTAAAGAgcaagaaaatatttcaatggCTTCGACTGAAACTGCTCAATGTGATCTTtgcaatcaaatatttaaaaatcctcAGGGGTTGGCCAGACACAGGTCCAGCACACATTTTAAAAAGCACTTGTATCAGTGCGATCAATGTGACAGAGGTTTCAGTGTAGAAGAATTCTATATAAAACACCGTAATCGTCATTTgggtataaaaatgtttaaatgtaaTCAATGTGACAAAGctTTTGAAACTAACAGTATCCTTAACCAACATTTGATTTCCCATTCCAAATTAACGCCACATTTATGTACAACTTGTGGAAAAAGTTTTCGTCGTCTTGATGGTTTAAGGCAGCATATGTTACGTCACGGAGATGAAAGACCATTTAAATGCTCTACATgttctaaaagttttaaatgtcTCTCTGATAAACTAAAACACATGATTATACACGATGAAAAACGTTATGTGTGTAATATTTGTGGTACACGCTTGGCTACACCTGAATCACTGTCACAACATCAAATGACACATACGGGCGAGAAACCTTTTAAATGTAGCCATTGTGATAAAAGCTTTATCTCACTGTCTAATATGAAGTGCCACGAGAGAATACATACGGGCGAAAAACCTTATAAATGTCAATATTGTTGGAAAACTTTTCGTCAGAGTAATGATCGTAATAAACATACCAACCGTATGcataaaaaggaaaagaatAATACAAAATCTGAGCAAAGTGAAACAAACTAA
- Protein Sequence
- MDVGLETDEYKSSDENTMESLPKIKDDLISSLDDIAIDKLAENKVDIDTSFEHNHNKNREEYLKPKEDGKQLLNFKLQSTEFSNKNLLEKTPSENVAKTSIDTKQCKICNKIFKQPQGLASHMSKTHFKKHLYQCQKCDKGFSVEELFIRHCNIHLGIKPFPCTQCDKAFETNSRLSQHLLCHSKESCYSCTICDKKFYRIDVLKQHMLRHDDEKQFQCSKCTITFKSFADHIKHIKTHKTEKNHDDKICDTQHLLASTSKQQIVQTEEKLFKCDQCDKCNDLRKHTRRMHKIKDCELEDEITMEGINDNKEDLEMPLEQILIELKPENKEDSENSEIEDVDKFSVKLEENKDGTKMEKELTKPRNPLLDNSKEQENISMASTETAQCDLCNQIFKNPQGLARHRSSTHFKKHLYQCDQCDRGFSVEEFYIKHRNRHLGIKMFKCNQCDKAFETNSILNQHLISHSKLTPHLCTTCGKSFRRLDGLRQHMLRHGDERPFKCSTCSKSFKCLSDKLKHMIIHDEKRYVCNICGTRLATPESLSQHQMTHTGEKPFKCSHCDKSFISLSNMKCHERIHTGEKPYKCQYCWKTFRQSNDRNKHTNRMHKKEKNNTKSEQSETN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -