Pobe005545.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phasia obesa
Gene Symbol
-
Assembly
GCA_949628195.1
Location
OX451215.1:84787280-84791735[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00025 0.038 16.1 5.0 2 23 128 149 127 149 0.98
2 9 9.8e-07 0.00015 23.6 3.1 1 23 155 177 155 177 0.99
3 9 1.5e-07 2.3e-05 26.1 1.8 1 23 183 205 183 205 0.99
4 9 1.2e-05 0.0018 20.2 2.5 1 23 309 331 309 331 0.98
5 9 5.9e-06 0.0009 21.2 0.9 1 23 337 359 337 359 0.98
6 9 0.00014 0.021 16.8 3.8 1 23 365 387 365 387 0.98
7 9 1.1e-06 0.00017 23.4 1.7 1 23 512 534 512 534 0.98
8 9 1.7e-05 0.0026 19.7 3.6 1 23 540 562 540 562 0.99
9 9 5.3e-05 0.008 18.2 2.4 1 20 568 587 568 589 0.94

Sequence Information

Coding Sequence
ATGCACCTCAATCATGCTACAGCTGTAAGTGCGGCCGCCATGGTCAACTACCAACACTATGCACCGGCACAAATTTCAACTTCCCACGGAGTGACCACTTCTTCGGGTCAACAACAGACAACAATATCTGCAGCTGGCCTGCAGCAAGCTCCCTTTACGCTGCATCAATTAACAGCGGTACAAGCCATACAACATCCTACTCATCAAGCCATGTTACATCCACAACATCCATTGGTTCATTTACTGGACATTTCAACAACTGCAGCAGCTTCCTCTACGCTAAATAACAATCATGCACCCATAACACCAATGCCAGTGACTAAAATTGAAATGCCCGAAGAGATTCCCGAGCCGATCACCGATGATCCGCGCAAAAAGAAACAGTGccacatttgtaaaaataaatttcgccAATTGACTACGCTGCGAAATCATATGAAAATACACACCGACGAAAGACCCTACAAGTGTAAACATTGCGACAAGGCCTTTCGTCAAATATCAACACTCACGAATCATGTCAAGATTCACACTGGCGAAAAACCATTCAAATGCAATATATGTTCTAAGGACTTTCGACAACAATCGACATTAATAAATCATATTAAAACGCATAAGGtttTTGCTTCACTTGCAGAATCAAATCAAACGCCTGCATCAATACTAAATTATCAGACGCAACAGACGCAGGGTACTCCACGTAAAGGTCACTCAAAATCTATTGTACATTCTGCAGCAGCTGCTGCTGCTCAGGCTCAAATAATACATCAACAACAgatgcaacaacagcagcaacaacaacagcaacaaggaCAAGGACAAAGTACAATTATAACATATACGCCACAGCAAAGgcaaaacattacaaaaagccTTTATACTGGGAGTTATAATTCGCCACAGGCCGATGAGCTGGTTAAGCCGTATCAGTGTAAGATCTGTCAAAAACGTTTCCCTCAGTTAAGTACCCTGCATAACCATGAACGCGCGCATATTGATCCTAAACCTTATAAATGCGATACATGCGAAAAGTCATTCAGTCAATTGGCAACATTGGCAAACCATAAGAAGATACATTCGGGTGATAAGCCCTATGCTTGCGCTTATTGTTGCATGACGTTCCGTCAACAAAGCACCCTTAACAATCACATGAAGACACATGCCAATCAAGTGGCCACCATAACAACTAATTCTACAACAGCAGGCACAGCGGGAGGGGGGTCAGCAGGACAAGGAGGTATTCATCATCATCCACATCACCATCAGGCTGGTGGCATTAACAACATCCCGTTAGCAGCAGCTACTATAATGGTGACACCAACAGCCTCAGGACATCTACAAATACAGCCACAAGTAGAACATCATCCTTTGCTACACTTTCTAGACAGCAATACAACCGTTAGCACCCTTAGCACTAAGGAGCAGTTTGCAACTCCAAACAACAATGTCAaccataacaataacaatagcaTCAACAATAACAGTACCGGCATTGTAGCCCACTGCTTACGCAACAGTTGTCCAGATCGTCCATTTATGTGCAGTGTCTGCCGACGGGCTTTCTCTCAGCAGAGCACACTCACAAATCACTTGAAGACCCATACCGGGGAAAAACCTtacaaatgtaaaatttgtgaaagCCATTTCAGACAATTGTCCACACTAAATAATCATATGAAAATTCATACGGGTGAGAAACCCTATGCTTGTTCCTATTGTCCTAAGCAATTTAGACAAAAAAGTACACTTACAAATCATAAACACAATAACATCTCATTTAATCACACACTCATCTAA
Protein Sequence
MHLNHATAVSAAAMVNYQHYAPAQISTSHGVTTSSGQQQTTISAAGLQQAPFTLHQLTAVQAIQHPTHQAMLHPQHPLVHLLDISTTAAASSTLNNNHAPITPMPVTKIEMPEEIPEPITDDPRKKKQCHICKNKFRQLTTLRNHMKIHTDERPYKCKHCDKAFRQISTLTNHVKIHTGEKPFKCNICSKDFRQQSTLINHIKTHKVFASLAESNQTPASILNYQTQQTQGTPRKGHSKSIVHSAAAAAAQAQIIHQQQMQQQQQQQQQQGQGQSTIITYTPQQRQNITKSLYTGSYNSPQADELVKPYQCKICQKRFPQLSTLHNHERAHIDPKPYKCDTCEKSFSQLATLANHKKIHSGDKPYACAYCCMTFRQQSTLNNHMKTHANQVATITTNSTTAGTAGGGSAGQGGIHHHPHHHQAGGINNIPLAAATIMVTPTASGHLQIQPQVEHHPLLHFLDSNTTVSTLSTKEQFATPNNNVNHNNNNSINNNSTGIVAHCLRNSCPDRPFMCSVCRRAFSQQSTLTNHLKTHTGEKPYKCKICESHFRQLSTLNNHMKIHTGEKPYACSYCPKQFRQKSTLTNHKHNNISFNHTLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00350334;
90% Identity
iTF_01261193;
80% Identity
-