Pobe033254.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phasia obesa
Gene Symbol
-
Assembly
GCA_949628195.1
Location
OX451218.1:12860913-12864033[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0001 0.016 17.3 0.9 1 23 129 152 129 152 0.97
2 13 6.2e-05 0.0095 17.9 1.4 2 23 158 180 157 180 0.97
3 13 9.5e-07 0.00014 23.6 3.8 1 23 189 212 189 212 0.97
4 13 6.6e-06 0.001 21.0 5.0 2 23 464 485 464 485 0.98
5 13 5.1e-07 7.8e-05 24.5 3.2 1 23 491 514 491 514 0.96
6 13 0.00016 0.025 16.6 2.1 1 23 519 542 519 542 0.98
7 13 5.6e-05 0.0086 18.1 1.2 1 23 553 575 553 575 0.95
8 13 0.0008 0.12 14.4 3.5 1 23 580 603 580 603 0.96
9 13 3.1e-05 0.0046 18.9 0.8 1 23 609 631 609 631 0.96
10 13 0.00014 0.021 16.9 1.9 1 23 637 659 637 659 0.98
11 13 7.1e-07 0.00011 24.1 1.6 3 23 667 687 666 687 0.99
12 13 4.9e-07 7.5e-05 24.5 0.3 1 23 693 715 693 715 0.99
13 13 0.0017 0.26 13.4 0.2 1 23 720 743 720 743 0.98

Sequence Information

Coding Sequence
ATGGAATTAAATACAAGTTCgtcaaattacaataaaaatacaatatgcCGTATATGCATGCAGAACGATACTGATTTATTTCCCATATTCGATCAAGTATTATTTGGCAACAAAACGACTACCATAGCAGAAATTATTTCTGAGTGTACAAAGTATCCAGTAGCACACAATGATCAGTTACCAGCACAAATATGTAATGACTGTATGGAAGCGGCACGGAACGCCCataattttaagaaacaaaCGGAAGAGGCTTATTGCCAACTAAAGGCGTTGTATGATATAATGTGGGTTCCAAAGCATGAGAAGGGTAGTAGTGGCAGTGTTATGAGGGTGAGTGCCCTCACAACAGACAAGTATACACAAACTGAAAAAAGCACAGTGTTTCAGTGTGAGATGTGCCCAACAAAGTTTTTTGTACAAAGCGAATTAAGACAACATCGTGCCACTAGTCATATAAATGATTGCAAAAAATGTCGTGTATGTGGAGAAACGTTCAATCATTTAGGTCAATTAAAGGTCCATCTATCAACAGAACATCCCAGCGAAGGTATACGTTGCGATTTTAAATGCAATATATGCTCAAGAGAGTTTACCCGTAAAGATCATTTAAAACGACATTTATTGCGCGTGCACAAGGTCGaggattataatttaaatatCTCGAAAGTATCTCTGGATGAACCTGAAATTGAAAATCTCACAGTACTGTCAGCTAGTTTGAATAATTATAGCAGTCATTGGCCGGATTACCAAGAGGAAGATGACAAAGAACCTATTGCAATTGAAGGTCAACCAAATGAAACTGTTGCCGCTACCAATCCTTTCTCCAGTGAAGATGAGGGATTAGATCACCGTGATTTTAATGACATGGAAGAAGAAGATGTTAAACAATTTGTAGAAACTATAGCCCATCCAGAAATATCCATTAAGCTTGAAAACCCAGACTACAGTTACAACAtttcaattgataaaaatgaaaaggtcTGCAAATCCacaaatagttcatttaatgaTATACAAACCAATGTATCTGTTCAAAGTTCGGAAAAACCCAATGTTAAAGCGGTTATAAAAGACAATGAAGATGAAGAAGAGAATGAGATTAAGAATATGAACAATTCATTTAATGATAATCATGAGAGCAACTTTAGCTCAAGTGAAGATGAGACTGACGAGGAATCCTACCGTGATGTTGAAGATGATGATAATGACAATTTTGAAATCACTGAAAAGGCAAACAAGTCTTTAGTGGCATTGCCCTTAAAACAAGATCAACCTAATGTTTCAACTGAAAAACCTACAAGTTCCACCACaaagactaaaataaaaaagacgaCTCCAAAACCACTTAGACGTCGCCATGGTTCCTCAAAAAACGAAGATAACCGTTGTAAGGAATGTAATCGAACATTTACCCGCTACAATCATCTGCTGCGCCATATGCTTACACACAGTGATGAAAAGCCTcatgtttgtaatttttgtggCAAGGGATTTTCGCGTTCGGatcatttacaaaaacatattcAAAGTATACACTGTGAAAAGAACTACAAATGTGATCAATGTTCAAGTGCTTATGGACGTAAGGATCATTTGCAAAGACATATAGAAACGAGACATAACAAAGATCCTTCGGTACAAAAACCTCAATTTGATTGTGACATGTGTGAGAAAAAGTTTACCACCAAAGCCTATTTGGCCAAACACAAACTTCTACATACCGATCGTCTATATGCGTGTAAACATTGTTCAGAAACGTTTACCGAGAAGGAGCAAATGAAAGAACACCAAAAGAATAGACATACCCAGCCACGTAACTTCTTGTGCAATATATGCGGAGATTCATTTCAAAGAAATGAATATCTTAAAATTCATATGCGCCGTCATACAGGCGAAAAACCGTATAAATGTCGTTTTTGTGAAAAAGGTTTTCCGCGTAGCACAGATTTAAAAATGCACGAAAGATATCATATGGGGCATAAACCAAATCTATGCAATTTATGCGGCAAAGGATTTCATCGTCCCTACAATCTTACTATACATATGCGTACCCATACGGGTGAAAAACCATACAAATGTAATCAGTGCCCCCAGGCGTTTGCTCAAAGTAACGATTTGAAAGCTCATATAAGACGTCATACAGGAGAACGTTTTCGTTGTGATATGTGCAGTGCAGCATTCTTGCAACGTTATGGCCTAAATGCTCACTTAAGAACGGTACATGGTATAATAGTAACGTCATTTACTGGACGCTTGCGCAAAACTGATCAGCCTATTGATGGTGCTGAGCCAGTTGATCAACAAGTTCCAACGGTACCGCAACTGCCACAAATTGCCCCTGCTGCACAAGAACAGACTCAATCTTCGCTGCCTTCACCTTCTTTAGATAGTAACGTTACACCTTCGCACATGTATTTAGGCCATCATTTTGGTAACCCTTTACCTGTTGTTGTTGCCCCCACCACACCAACATCCCCCATAGATATTTCATCAACGAGTGCATCAACATTGCCTCTTCCATTACCACATCCATCGTCACAACAAatgtaa
Protein Sequence
MELNTSSSNYNKNTICRICMQNDTDLFPIFDQVLFGNKTTTIAEIISECTKYPVAHNDQLPAQICNDCMEAARNAHNFKKQTEEAYCQLKALYDIMWVPKHEKGSSGSVMRVSALTTDKYTQTEKSTVFQCEMCPTKFFVQSELRQHRATSHINDCKKCRVCGETFNHLGQLKVHLSTEHPSEGIRCDFKCNICSREFTRKDHLKRHLLRVHKVEDYNLNISKVSLDEPEIENLTVLSASLNNYSSHWPDYQEEDDKEPIAIEGQPNETVAATNPFSSEDEGLDHRDFNDMEEEDVKQFVETIAHPEISIKLENPDYSYNISIDKNEKVCKSTNSSFNDIQTNVSVQSSEKPNVKAVIKDNEDEEENEIKNMNNSFNDNHESNFSSSEDETDEESYRDVEDDDNDNFEITEKANKSLVALPLKQDQPNVSTEKPTSSTTKTKIKKTTPKPLRRRHGSSKNEDNRCKECNRTFTRYNHLLRHMLTHSDEKPHVCNFCGKGFSRSDHLQKHIQSIHCEKNYKCDQCSSAYGRKDHLQRHIETRHNKDPSVQKPQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCSETFTEKEQMKEHQKNRHTQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHMGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDMCSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRKTDQPIDGAEPVDQQVPTVPQLPQIAPAAQEQTQSSLPSPSLDSNVTPSHMYLGHHFGNPLPVVVAPTTPTSPIDISSTSASTLPLPLPHPSSQQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01261178;
90% Identity
-
80% Identity
-