Pobe026691.1
Basic Information
- Insect
- Phasia obesa
- Gene Symbol
- -
- Assembly
- GCA_949628195.1
- Location
- OX451217.1:49048106-49049965[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-07 0.00046 21.5 0.0 11 39 402 430 397 434 0.83 2 4 3.2e-14 1.3e-10 42.4 0.0 5 44 450 489 447 490 0.93 3 4 0.016 66 4.9 0.0 27 38 519 530 515 536 0.88 4 4 8.5e-15 3.5e-11 44.2 0.0 4 41 558 595 558 597 0.92
Sequence Information
- Coding Sequence
- ATGAATCATTTAAAGTGGATGGGCCATTCGGCCACAATATTAGATATACACAAAAATCTACGAGCCGATTTGAAGAGCTGTGAAGTGACGTTAATGGCCAAGGGACACTGTGTTAAAGCTCATCGTTTTGTTTTATCCTCGTGCAGTGACTTGCTACGATGTCTTTTAACAGATGTTCCCATTGGGCAAGAATGTTGTGTTATGATGCCCGACATAAAAGGTTATTTGTTGGACAACGTTTtagcttttatatatttaggaGAATGTTCTTTATCCTCCACAAATTTGTCAGAGTTTTTAGAAGCAATTAATGTATTGGGCATTAAGAGTGCCATAAGTTTTGAGTGTAATACAAACGCTTTGCAGACAGCTCAAAGTACAAGTCATAGCACCATCGCTCTTGATAGTAACACAACAATAGCACCCGTAAATAATACATTGGAAAACGCACAAATAACAGTTCCCCGACTGTCTGCTGAATCGTTGCATCAGGAAGAAATAATTGAAtcgcagaatgtaatgcataacGAAGCTCATACTGCAACTGCGGGTAACACTAATACTGTTGCTGCTACTAGAGAACTTGACTTTTTGGATGTATATCATGAACCTCAACATAAAATAACATACTCAATAGAACATGTTCCAGGGTCTACGGCGGggaatgaatttattttaactgaAAACTCTGGCACATTCACCCTAACACACAGTGGTAAATTAGAACCGACTACATCTCCGGCTGAATCTTCTAATATGGAAGTTACCGAGGATGACGGTTGTGATTCGCATATAATAGAAGAATACAGTAGCGGTGATGAACCCTTAATTCAGATAGGTGAAACTGGGCATGGACAACATAGTGTAACGGTTGCTCAGTCATCTAACCAACAACATCCTCAACAACACACAACACTAGCTTCAACTTCAACCGCTACAACTTCTATTATGCAAgtaaaacctaaaattaaaaccCTCAAGCTAAAACATTCCCAAGGAACGCAAAGAATAATAACCAAAATGGAACAACTTTCTGAAGATACAGCAAGCGACGATCCAATATCGATACTACAAAcatcaaatgaaagttttactTTGCTTAAAGATGCGTCCATAATGTCCACAAGTAACACTAGTCACGACGAATCGAcagatttttctataaataactCCGGTTCATCTGCTACTGAATTGGCCTATCAAGCTATGATCAGCGAGGGGATGTCTTTACCAAAAGCTGCTGACAAATTTAATGTCTCCAAGGCGGAACTCTGGCGGCGAGTGCGCAGTACTGGAGTAGAACAGCTCAACAAACCAGTCAAACTTGATCCCGATAAGGTTGATGTTATCGAACTTGCTAGTAAGGCTGTAATTAACGAGGGATTGTCACTACAAAAGGCCGCCATACGTTATGACATCTCAAAAACCGTGCTCTGGCGCAGGGTTCGTAAACATCCGCAATATATGAAGACAGCACGGGAAAATCCGATTATAACTAAGGCATATGAACGGTTAAAATCAGGTGAATCCCTTAAAAGCATATCACAAGATTTAGATATACCCATGTCAACTTTGCACCGGCATAAAGTACGACTCTCACAAACCGGTCAGTTACCAGACTTTGTTACTTGTAAAAAACGTGACAGCATGTCTAAAGATGACCTTAAATTAAAACTGTCTAAAGCCGTGCATGCCTGCGTACACGAAGGAATGTCACAAAATCATGCtgctaatttatttcaaatatctaAGAGCACATTGTGGAGACATCTGCAAAAACGTGTAGCTGAAGCTGAGGCAGCTGAGACCGAATCCCTGGGCGATGAGGATGAAATTAAACAAGAAGTCATTCTTTCATAA
- Protein Sequence
- MNHLKWMGHSATILDIHKNLRADLKSCEVTLMAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCVMMPDIKGYLLDNVLAFIYLGECSLSSTNLSEFLEAINVLGIKSAISFECNTNALQTAQSTSHSTIALDSNTTIAPVNNTLENAQITVPRLSAESLHQEEIIESQNVMHNEAHTATAGNTNTVAATRELDFLDVYHEPQHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEPTTSPAESSNMEVTEDDGCDSHIIEEYSSGDEPLIQIGETGHGQHSVTVAQSSNQQHPQQHTTLASTSTATTSIMQVKPKIKTLKLKHSQGTQRIITKMEQLSEDTASDDPISILQTSNESFTLLKDASIMSTSNTSHDESTDFSINNSGSSATELAYQAMISEGMSLPKAADKFNVSKAELWRRVRSTGVEQLNKPVKLDPDKVDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIITKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESLGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01177077;
- 80% Identity
- iTF_01177077;