Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.4e-09 0.0001 23.8 13.1 1 19 31 49 31 49 0.97

2 11 0.44 8.4e+03 -1.4 1.3 8 11 54 57 53 59 0.85

3 11 0.95 1.8e+04 -2.5 1.5 13 18 73 80 72 84 0.63

4 11 0.00072 14 7.5 17.2 1 19 90 108 90 108 0.99

5 11 0.39 7.4e+03 -1.3 0.7 4 7 115 118 114 121 0.74

6 11 1.1e-07 0.002 19.7 12.3 1 19 149 171 149 171 0.88

7 11 2.9 5.5e+04 -4.1 0.9 1 4 180 182 180 183 0.79

8 11 1.3 2.5e+04 -3.0 2.2 6 10 201 205 201 205 0.94

9 11 0.0041 77 5.1 7.3 1 11 211 221 211 222 0.93

10 11 0.016 3.1e+02 3.1 0.6 4 10 226 232 225 232 0.92

11 11 9.4e-07 0.018 16.7 14.0 3 19 240 256 238 256 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.4e-09	0.0001	23.8	13.1	1	19	31	49	31	49	0.97
2	11	0.44	8.4e+03	-1.4	1.3	8	11	54	57	53	59	0.85
3	11	0.95	1.8e+04	-2.5	1.5	13	18	73	80	72	84	0.63
4	11	0.00072	14	7.5	17.2	1	19	90	108	90	108	0.99
5	11	0.39	7.4e+03	-1.3	0.7	4	7	115	118	114	121	0.74
6	11	1.1e-07	0.002	19.7	12.3	1	19	149	171	149	171	0.88
7	11	2.9	5.5e+04	-4.1	0.9	1	4	180	182	180	183	0.79
8	11	1.3	2.5e+04	-3.0	2.2	6	10	201	205	201	205	0.94
9	11	0.0041	77	5.1	7.3	1	11	211	221	211	222	0.93
10	11	0.016	3.1e+02	3.1	0.6	4	10	226	232	225	232	0.92
11	11	9.4e-07	0.018	16.7	14.0	3	19	240	256	238	256	0.92

Coding Sequence: CAATGTGGTTGTGGTGCTGAGACTCGTTCGGTGCTATGCAGCAGTAAGCTGCCCCAGCTGTGCGGCCGGGAGTGTAAGCGCAAGTTAGTCTGCGGTGTACACAAGTGTGAACGCGAATGTCACGAAGGGCCTTGCGATGATTGTACAGAGATGGTCACTCAAGTGTGCCACTGTCCCGCTGCCAAGTCGCGCTCGGTTCCGTGCACACAGGGGAAGGGCGCGTGCGGTGCGTGGTCGTGCGGCGCGGAGTGCGCGCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGGCACGCGTGCCACCCGCCGCCGTGCGCACCGTGCCCGTTGCGCCCGGACAACGTGCACACTTGCCCGTGCGGCAACACCAGAATTGAAAAGGATCAAAGGAAGACATGCTCTGACCCGATTCCTCTGTGTGGAAACATCTGCGCTAAGCCGTTACTTTGTGGTCCAGAAGGAGACAAACACTTTTGCAAACAACTATGTCATGAAGGTGCATGCCCAACGTGTCCCGGCAAGACGCTGTTGCCTTGCCGCTGTGGCCATTCAAGCCGCGAGGTGCCCTGCTCCGAATTGCCAGAAGTTTCCAACAATGTGCTGtgccaaaaaaaatgtaacaagAAACTGTCCTGCGGGCGGCACCGTTGCCGCACGGCGTGTTGCGCCGCGGCATCGCACCGTTGCGCCGTGGTCTGTGGGCGCACGCTCTCCTGCCAGCTGCACCGCTGCGAGGAGTTCTGTCACACCGGCCACTGCGCGCCCTGTCCGCGAGTCAGTAAGTAA
Protein Sequence: QCGCGAETRSVLCSSKLPQLCGRECKRKLVCGVHKCERECHEGPCDDCTEMVTQVCHCPAAKSRSVPCTQGKGACGAWSCGAECARVLACGAHVCRHACHPPPCAPCPLRPDNVHTCPCGNTRIEKDQRKTCSDPIPLCGNICAKPLLCGPEGDKHFCKQLCHEGACPTCPGKTLLPCRCGHSSREVPCSELPEVSNNVLCQKKCNKKLSCGRHRCRTACCAAASHRCAVVCGRTLSCQLHRCEEFCHTGHCAPCPRVSK

Sequence clustering based on sequence similarity using MMseqs2