Basic Information

Insect: Pharmacophagus antenor
Gene Symbol: -
Assembly: GCA_018245475.1
Location: DWQX01017351.1:3452-4572[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0076 1.4 11.1 4.1 1 23 151 173 151 173 0.98

2 8 0.022 3.9 9.7 2.2 3 23 180 201 180 201 0.95

3 8 0.00014 0.026 16.5 0.5 1 23 208 230 208 230 0.97

4 8 1.1e-05 0.002 20.0 1.0 2 23 234 255 233 255 0.97

5 8 0.058 11 8.3 0.2 2 23 266 288 265 288 0.95

6 8 1.1e-06 0.00019 23.2 1.9 1 23 294 316 294 316 0.98

7 8 0.0035 0.64 12.2 2.6 3 23 324 344 323 344 0.97

8 8 0.0075 1.4 11.1 8.0 1 23 350 373 350 373 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0076	1.4	11.1	4.1	1	23	151	173	151	173	0.98
2	8	0.022	3.9	9.7	2.2	3	23	180	201	180	201	0.95
3	8	0.00014	0.026	16.5	0.5	1	23	208	230	208	230	0.97
4	8	1.1e-05	0.002	20.0	1.0	2	23	234	255	233	255	0.97
5	8	0.058	11	8.3	0.2	2	23	266	288	265	288	0.95
6	8	1.1e-06	0.00019	23.2	1.9	1	23	294	316	294	316	0.98
7	8	0.0035	0.64	12.2	2.6	3	23	324	344	323	344	0.97
8	8	0.0075	1.4	11.1	8.0	1	23	350	373	350	373	0.96

Sequence Information

Coding Sequence: ATGCTGGAGAATCTGGACCAAGTTAAATATCCGGAGAGCAATATGATGATCGAAATATCGATGGACACCGTATTGCCTTTGACCGAGAGGAGGGTGGACGACGATTTGTACGACAGTGACGTCTTTGACGAGTCCAAAATGAAGGTGGATGTGTTGGAAGACGAATTCAGAGTATCCACCGAGGGTTCGGAAGAGGAGAGCACGAATTCCGACGATCTGACGATAGAGGAATACAAGATAAGATTATTCGACGACCTGAAGAAAACGCTCTACCCGGTGGATGTAGAGATAGTAGAGCCGGACACGGAAGACGGCAAGGCGAACGCCAATAAACTAGTCAACGGCTACCAGTCGACCGTGAAGTTGAACAGAACGCCGATTGGCGACGTGTGCAGTGAGTTTTTAACATTCAACAAGAGGCCGAAGTTGCCGAGGAGGCCGCGGCCTAAATACAAGTGTCCGTTTTGCAGTAAACACTTCATATCCGATTACTTCATAAAGAAGCACGTGTTGAAACACATCAACGGGAAAGTTGGCTGCGACACGTGCACCGAGCGGTTCAATTCGAAGTTTCACTACTTCGAACACGTGAAGGCGGCGCACAGAGGCATCGGTGGTGTTTACGCCTGCAAGATTTGCGGCAGGTCTTTCGTCGAAGCGAAAAAGTTTCTGTCGCACGAAACTACACACCGTAACGTCGAGTGTCCGCTGTGCGAGAAGGTGTTCGCTACGCAGGCGCATTTCGACAGGCACTTCCGCAGGCACACGCTCAAATTGAAGACGCACAAAGCACTAACGTGCAGCTTCTGCGAGAAGAGGGCGCCGAACGAGAACGAGCTATCGCTGCACGTGAACAAGATACATTTGCAAATAAAGCCGTACAGCTGCGACATGTGCGACAAGCGGTTCTACACGGAGTACAATCTGAGCAGTCACAGGAGGGTGCACAGTTTCTACACTAACGAGAACTGCGAGTTCTGCGACAAGGTCTTCAAATGCAGGAGGGATTTGGTCATACACGTTAGGAGGCACATAGGCACCAAGCCCCACCACTGCCACGTGTGCAAGCAATCCTTTTACTCCGAGACGAGTCAGATGAGACACATGAGGAAGGTACACGG
Protein Sequence: MLENLDQVKYPESNMMIEISMDTVLPLTERRVDDDLYDSDVFDESKMKVDVLEDEFRVSTEGSEEESTNSDDLTIEEYKIRLFDDLKKTLYPVDVEIVEPDTEDGKANANKLVNGYQSTVKLNRTPIGDVCSEFLTFNKRPKLPRRPRPKYKCPFCSKHFISDYFIKKHVLKHINGKVGCDTCTERFNSKFHYFEHVKAAHRGIGGVYACKICGRSFVEAKKFLSHETTHRNVECPLCEKVFATQAHFDRHFRRHTLKLKTHKALTCSFCEKRAPNENELSLHVNKIHLQIKPYSCDMCDKRFYTEYNLSSHRRVHSFYTNENCEFCDKVFKCRRDLVIHVRRHIGTKPHHCHVCKQSFYSETSQMRHMRKVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -