Basic Information

Insect: Pharmacophagus antenor
Gene Symbol: -
Assembly: GCA_018245475.1
Location: DWQX01005031.1:454-2364[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.028 5 9.4 3.2 1 23 56 78 56 78 0.96

2 16 0.36 65 5.9 0.0 2 23 107 129 106 129 0.93

3 16 0.023 4.2 9.6 0.7 2 23 150 172 149 172 0.94

4 16 0.003 0.55 12.4 2.0 2 23 178 200 177 200 0.94

5 16 0.012 2.1 10.5 1.4 1 23 205 228 205 228 0.95

6 16 1.6 3e+02 3.8 0.1 2 23 231 253 230 253 0.90

7 16 0.32 58 6.0 3.1 2 22 260 280 259 280 0.93

8 16 0.0052 0.95 11.6 0.5 1 23 341 364 341 364 0.92

9 16 0.43 78 5.6 0.1 3 23 393 414 391 414 0.94

10 16 0.047 8.6 8.6 0.2 3 23 438 460 436 460 0.94

11 16 0.00037 0.067 15.3 0.6 3 20 467 484 465 488 0.90

12 16 0.0061 1.1 11.4 0.4 1 23 493 516 493 516 0.97

13 16 0.0012 0.22 13.6 1.6 2 23 522 544 522 544 0.94

14 16 8.7e-05 0.016 17.2 4.7 1 23 548 571 548 571 0.97

15 16 0.00072 0.13 14.3 0.4 2 23 578 599 577 599 0.96

16 16 0.0048 0.88 11.7 2.7 1 23 605 627 605 627 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.028	5	9.4	3.2	1	23	56	78	56	78	0.96
2	16	0.36	65	5.9	0.0	2	23	107	129	106	129	0.93
3	16	0.023	4.2	9.6	0.7	2	23	150	172	149	172	0.94
4	16	0.003	0.55	12.4	2.0	2	23	178	200	177	200	0.94
5	16	0.012	2.1	10.5	1.4	1	23	205	228	205	228	0.95
6	16	1.6	3e+02	3.8	0.1	2	23	231	253	230	253	0.90
7	16	0.32	58	6.0	3.1	2	22	260	280	259	280	0.93
8	16	0.0052	0.95	11.6	0.5	1	23	341	364	341	364	0.92
9	16	0.43	78	5.6	0.1	3	23	393	414	391	414	0.94
10	16	0.047	8.6	8.6	0.2	3	23	438	460	436	460	0.94
11	16	0.00037	0.067	15.3	0.6	3	20	467	484	465	488	0.90
12	16	0.0061	1.1	11.4	0.4	1	23	493	516	493	516	0.97
13	16	0.0012	0.22	13.6	1.6	2	23	522	544	522	544	0.94
14	16	8.7e-05	0.016	17.2	4.7	1	23	548	571	548	571	0.97
15	16	0.00072	0.13	14.3	0.4	2	23	578	599	577	599	0.96
16	16	0.0048	0.88	11.7	2.7	1	23	605	627	605	627	0.97

Sequence Information

Coding Sequence: atgattaaaatagaGGGTACATTTACAGTTGAAAATACCGTTACCATTTCAGATGTTAAACCGCGCAAACACAAAGGCGGCGAATCGTCCTCAATGCGTAGACGGAGGAACCTACAAATTCTATTCAACAACACTACGATAATACCGTTCAAATGGAGGGGGAAGTACCTATGCTTCTATTGCAGCAAACATCTTATCGAGTACGATGAATTGAGACGCCACACTAAATCCCACGGGGACTGTTCTGTCGTCGATCACTCGTTGAAAGTCCTAAAAGGCGGTCAGAATATGGaggttaaaattgatatatcCGATATAACATGCCAGATTTGTAACGAGCCGTTACCAACTGTCGACGAAATGTTGGATCATTTGAAAGGTAAACACAAGCTCGAATACGAAAGGAATCTGGAGATGGCTATAGAAGAATACAGGTTAGCCGATCTAAAATGTCTGTCGTGCGATGAGAAATTCTCCTATTTCGGCTATCTGGTGTCTCATGTTAACAACAAGCATCCGAAGAAATGCTTGATATGCGACAGTTGCAAGCAGAGGTTCAACAAGAAGAGAGACTTGTTCTCgcacataaaaaattatcataggGAAGGTGGTTACAGGTGCGACCTTTGCCCGCAGAATTTCACGTCTTTGAACATATTAAGGAAACATAAGAATAATAGACATTTGACCAGGTGTAATATTTGCCAATTGAACCTGCCATCGGCcgcattaaaacaaaaacacgtAGAACTGGAACACCCGGATGATGGCTCCTTGCAATGCGACAACTGCTGTAAGGTGTTCCACACGAAACAGGGCTTAAAAATGCATGCGAGGAAATGTAAAGGAGCGGCGGATATGTTCGGGATTGCAATCAAAAGGGAGGATTATGAAGCGATGGATTTGGATGAGAACTACGAAGACCTCGCGAAGAGGCCTAGCGTGAAGCAAATTAGAGAGAATAtcttgataataataaacatgtcgACGGCGATACCTTTCAATTTCTACAAGAACAAGTTTAACTGTTTCTACTGCTCTAAAGACTTCCCGGATTCGGAGACGATGAGGGAACACACGGTCGTGGAACACCCGGTGTGCGATGTGAAACAGAAATGCATCAGGAAATGTAGGGAGTCGGTCGCGTGCGTGAAAATCGATATATCCTCGCTCGCATGTAAGATTTGCTTCCAAACAATTAACGAATTGGACAGTTTGATAGAGCATTTAACAGTCAAACACAACGCTAACTACGACAAGTCCATAACGACGTGCTTGCAAccttacaaattaattaaagacaACATGGCCTGCCCGGTGTGTCCGAACGAGGTCTTTAGATTCTTCGGTACGCTGCTGAAACATATGAACAACAAACATACGAACAACAACATCATATGCGTGTACTGCGGTCAGACTTTTAGGCGGGATCAGAACCTCAGGGTACACATCTGGCGGCATCACAGAGACGGTAGATTCAAATGTAACATATGTGGCGCCGAATGCAATATACCCTCACGACTGTACATGCACATGGCGAAAGTCCACGGCGTTAAAGCGGCAAAGTGTCCGAAGTGCAGCGAATGTTTCGCGACACAATATCTGAGGCAGAAGCATTTGATAGAAGCCCACGAGTCCGGTCACAAGTGCTCGTACTGCGGCAAGCTTTTCACACGAAACTCCTTCATGCGCGACCACGTCAGACGGACGCATTTGAAGGAGAAAAACGTCGAGTGCGCCATATGTAGCATGAAGTTCTTTAACAACATACTGCTGAAGAGGCATATGGTCAAACATAGCGGCGAGAAAAATTTCAACTGCGATGTATGCGGGGAGCGTTTCTATTGGAGGAAGAGTCTGCATAATCATATGACACGTCACAACAATCACGTAGCTCCAGTGCAAATATAA
Protein Sequence: MIKIEGTFTVENTVTISDVKPRKHKGGESSSMRRRRNLQILFNNTTIIPFKWRGKYLCFYCSKHLIEYDELRRHTKSHGDCSVVDHSLKVLKGGQNMEVKIDISDITCQICNEPLPTVDEMLDHLKGKHKLEYERNLEMAIEEYRLADLKCLSCDEKFSYFGYLVSHVNNKHPKKCLICDSCKQRFNKKRDLFSHIKNYHREGGYRCDLCPQNFTSLNILRKHKNNRHLTRCNICQLNLPSAALKQKHVELEHPDDGSLQCDNCCKVFHTKQGLKMHARKCKGAADMFGIAIKREDYEAMDLDENYEDLAKRPSVKQIRENILIIINMSTAIPFNFYKNKFNCFYCSKDFPDSETMREHTVVEHPVCDVKQKCIRKCRESVACVKIDISSLACKICFQTINELDSLIEHLTVKHNANYDKSITTCLQPYKLIKDNMACPVCPNEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKVHGVKAAKCPKCSECFATQYLRQKHLIEAHESGHKCSYCGKLFTRNSFMRDHVRRTHLKEKNVECAICSMKFFNNILLKRHMVKHSGEKNFNCDVCGERFYWRKSLHNHMTRHNNHVAPVQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01198043;
90% Identity: iTF_01130217;
80% Identity: -