Pant023774.2
Basic Information
- Insect
- Pharmacophagus antenor
- Gene Symbol
- -
- Assembly
- GCA_018245475.1
- Location
- DWQX01015158.1:1-5213[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0055 1 11.6 0.8 1 20 68 87 68 88 0.96 2 29 4.1 7.5e+02 2.5 1.5 3 23 118 138 117 138 0.93 3 29 0.2 36 6.7 0.3 2 23 161 182 160 182 0.97 4 29 0.006 1.1 11.5 0.3 1 23 186 208 186 208 0.94 5 29 0.63 1.1e+02 5.1 1.7 1 21 213 233 213 236 0.74 6 29 0.0058 1.1 11.5 0.5 1 23 242 265 242 265 0.95 7 29 0.02 3.6 9.8 0.4 1 23 272 295 272 295 0.97 8 29 2e-06 0.00036 22.4 0.6 1 23 302 324 302 324 0.97 9 29 6.2e-06 0.0011 20.8 2.9 1 23 330 352 330 352 0.98 10 29 0.0011 0.19 13.8 0.1 2 23 356 378 355 378 0.95 11 29 0.016 2.9 10.1 0.6 1 23 466 489 466 489 0.91 12 29 0.21 38 6.6 4.1 2 23 516 538 515 538 0.95 13 29 0.098 18 7.6 0.4 2 23 561 582 560 582 0.96 14 29 0.00016 0.029 16.4 0.5 1 23 586 608 586 608 0.97 15 29 2 3.7e+02 3.5 0.6 1 21 613 633 613 636 0.77 16 29 0.0077 1.4 11.1 0.4 1 23 642 665 642 665 0.90 17 29 0.057 10 8.4 3.3 1 23 672 695 672 695 0.86 18 29 0.15 27 7.0 0.5 1 13 702 714 702 716 0.89 19 29 0.0014 0.26 13.4 0.2 3 23 811 832 809 832 0.92 20 29 0.002 0.36 13.0 0.5 1 23 854 876 854 876 0.99 21 29 0.26 48 6.3 6.5 1 21 880 900 880 902 0.92 22 29 9.1 1.7e+03 1.4 0.1 3 23 909 930 907 930 0.92 23 29 0.038 7 8.9 3.0 1 23 936 959 936 959 0.96 24 29 0.11 21 7.4 0.1 1 23 1040 1062 1040 1062 0.94 25 29 2.4 4.3e+02 3.3 0.2 2 23 1086 1108 1085 1108 0.92 26 29 0.0043 0.79 11.9 3.4 1 23 1130 1152 1130 1152 0.98 27 29 0.00031 0.056 15.5 0.8 2 23 1157 1178 1157 1178 0.97 28 29 0.0023 0.42 12.7 2.3 1 23 1185 1208 1185 1208 0.98 29 29 0.013 2.4 10.4 1.5 1 23 1214 1237 1214 1237 0.96
Sequence Information
- Coding Sequence
- cGTCACGGACAAAGTGGAAACGAAAGTATCGTTAAAATAGAGAGACATGACGTTTTACGTTTAGTTGAAATAAACGAACTGAAGGCGAAGCGCCGCTACGTCAGGAGCGCCCGCGCCGAGGCCAGGATTGTCACAAAGAAAAACGCGAACACCCTACTGGAATGTTGGTCCTTTTGCCCGTTCAGGTGGCAAAGGAACCGTTTCAAGTGCGCCTACTGCGACGACGGCTTCACAAACTGCAGCGACCTGCGGCAGCACGTCGCCGGCTGCGCCCCCAAGCACAGCGTCAAAGACATCTACAGCAAGTTCAAGGAGATGTCGCTGATCAACGTGGACGTGACAGGCGCCTCGTGCCGCCTGTGCAAGTGTCCCTACTCGGACGTTAATCAAATGCGCCAGCACGCGATCCAACACGGGTACCACTTCGACAGTAATCGGCCGGACGGCGTCTTGCCTTTCAGTCTGGACAAAGAGAACTGGCGCTGCGTCATATGCCGTGAGCTCTTCAACAACTTCCTAAAACTTTACGAGCACATGAACGTGCACTACCAACACCACATCTGTCCGACGTGCGGCAAGGGGTACATGACCGCGCCGCGCTTAAGGAAGCACTCCGAGGTGCACGTCACGGGCTCGTTTCCCTGCGACAAGTGCAGCCGCGCGTTCACGATGCGCGCCGCTCGCGACCACCACAAGGCGCACGCGCACGCCAAGAGCCCCCGCTACGAGTGTCCCCACTGTAACATACGCTTCAATGGCTATTACGACAGGATGGCACATCTGAACGAGGCTCACAGGGAGAAGGAAGTCTCTTACCGGTGCAACGCGTGCGAACTGACGTTCAAGACGAGCGGAAAGCGCGCGATGCACGTGCGGTCCGCGCACCTTCCGCAGCCGCGCAAGTTCGCGTGCCCCTACTGTGACTGGCTGTTTAGGACCAGCTACGAGCTGAAAAGGCACATGGTCAAGCACACCGGCGAGAGGAACTTCTGTTGCACGGTCTGCGGCAAGTCTTACCCGCGGAGTCGCGCGCTCAGGACGCACCTTAAGACCCACGAGGAGCTCATCTGCAAATGGTGCGGCGCGCTGTTCAAGCAGCGCGCCCAGCTGCTCACCCACGTGCGGATAAGTCACCCGGACTTGAACGATCTGGTTCCTCTCGAATCTGAAAAGATTCCGTGTTCCGCTAGTGCGGAAGCGGTGGCAAATGTAGTTAAGCGAGTTAGGAAGTTAAAAGAGAACGTGAGCGCGCGCCAGATgcggcggcgtcggcgcgcCAACAACGAGCTGCCGGAGGAATCCGACAGGCGGATCTCCAAAACCATGATGAGGAGGAACGCCCTGACCATTCTGGAATGTTCCACTGCGTGGGCGTTCCGCTGGTTTCACAGCGCGTTCTTCTGCTCATATTGCGATGAAAAATTCGTCGACACCGCACCACTGCGGGAGCACGTACACGCATCCCATATCTCTAGCAGTCCGACCAAACGTGTCTTCTCCAAACTAACCGAGAACAACATGCTCAAAGTCGAAATCACCAATTTGAATTGTAGGCTCTGCAGTCATAGCTGCACCACCATAGATACACTGAAAAACCACTTAACAACAGCACACAAGAAGAAAATTTCGTATGAGCACAGCGATGGTGTCTTGCCGTTCAAACTGGACGAGAACGGGTTGCGTTGTCAGATATGTTTCGAGCTCTTCGCCAGCTTCTCGAAGATAAACGAACACATGAATTtacattatcaaaattatatttgcgACGCTTGCGGGAAGGCGTTCGTGTCGAAGTCTAGGTTTAGGACCCACGTGCAGTCGCATGAGGTCGGTAGTTTCCCCTGTGGAGAATGCGACGAGACATTGTCAACGCGTGCCGCTCGCATGTGTCACAGGTTGAAGGTGCATAGAAAAGGTGTCCGATACACTTGCCCCCGGTGCTCCGAGGTGTTCACGACGTACTATGCGCGGGCGAAACATTTGGTCGAGAGTCACGAGCAGTTGCGTAGGGATTACGAGTGTACCGTATGCGGTAAAGCCTTTGACACTAGCTGCAAGCGGGCAACTCACTGTCGCGTAGCCCACAAGCCTATCGAGAAACGATACGAGTGTCCGTACTGCCCTTGGTACTTTACCAgaaCAGAAGAAAGCAATGCTTCTGATTCGACAATagaaaaagttaaagtaaaatggAACTGGAAACGTAAGCTAGCGGAGGATAAAGCCAATGCAGCTGTTATATTAGAATGTTCAAACGCGGTCGCCTTTAGATGGCAACGTGGCAGATTCATGTGCGCCTACTGTCCTCTTATTCTCCCCAGTATAACCGACATCCGTCTTCATTCCAATGATCATAAAAAACTCGATGTCTTTGATAATACTAAAGTACGCAACACTCACCCTCTACGAGTTGACATAGCTGATCTCGCTTGCAATATATGCGGTGAAAAATTTGACAATTTGGAATATTTCAAAGTTCATTTAACGGAGAGACACGAGAAAGTTTTCAATTTGAAGCACGGCGACGGCCTGTTGCCGTTTATGTTGGCGGGCGAGGAGTACAGATGCGTCGGTTGCGGCGAACGATGCGAGAGTTTTATGGGTCTGCTGGCTCACATGAACCGACATTACGCTACGCACTTTTGTTATGTATGCGGCAAAGGCTATTCGGGCAAACATAAGTTGCAGTCGCATCTGAAATGCCACGAATCGGGCGAATTCGGTTGCACCAAGTGCGACAGCGTGCTGCCGAGTGCGACGGCCAAGAGTCGACACCTGGCGGTAGCTCATGGGCGACGGGAACGGTATAGATGTCCCCTCTGCGAGGAGCACTTCGTCTCCTATCACTCGCGATTGCGACATCTGGACAAAGTGCACGGGAAGAAGGCGGAGTATAGATGCGACAGATGTTCTTCGATATTCGCCAGTGGTGCTTTAAGGAATTGCCACGTGAAGATCGTCCACGAAGTAAAGAAAAACaattttcttttgtttttaggGCCCCGGGATGACAATGTTAGATGGAAACCGACGCGGCGGTATAACGATCACAGAGATAACGCCGGCATTATTATTGAGTGTTCCAACGCTTGCCCGTTTAGATGGAAAAGGGGAGAGTTCGTTTGCGCTTATTGCCCAACCACTTTCGGGGACTTCACCGGTGTGAGGCTTCACACGGCCAATCACTTGTGCAGGGTGGAAGCGCTGCGCTTCGTGCGCCCCGTGAACTCTATTAAAGCCGATATCACCGATCTGCAGTGCGTTCTTTGTTTCGAAAGCATGAAGGATTTGGACGAGCTCGCCGACCACTTATGCGCCGGCCACAGCAAGCCAATTGTCAAAGAATTCGGTTTCGGCATAACGCCATTCTTAATCAATGGCAAAGATTTCATTTGTTACCACTGCAACAAGCGTTACGATCTCTTCACCAATCTCAACATTCATATCAACAAGCACGACAGGAATAACGTATGCTGCAAATGTGGAAAAACCTTCTCAGCACCTCAGCGGCTCGAGGCGCACATGGTCACTCACGACGGAGCGGAAAACCTGTTCCGATGCGCCAAGTGCAAGGAGAACTTCGCGACGCGCAAACTCATGAGCAGCCACATGAATCGCAAGCACAGCCCACCGCACCGCTACAAGTGTCCCTACTGCCAGGACAAGTTCAAAACCTACGGCGACAGGTCGAAGCATCTGAAAGAAGCGCACGATAGGAATGTGGAGTACCCGTG
- Protein Sequence
- RHGQSGNESIVKIERHDVLRLVEINELKAKRRYVRSARAEARIVTKKNANTLLECWSFCPFRWQRNRFKCAYCDDGFTNCSDLRQHVAGCAPKHSVKDIYSKFKEMSLINVDVTGASCRLCKCPYSDVNQMRQHAIQHGYHFDSNRPDGVLPFSLDKENWRCVICRELFNNFLKLYEHMNVHYQHHICPTCGKGYMTAPRLRKHSEVHVTGSFPCDKCSRAFTMRAARDHHKAHAHAKSPRYECPHCNIRFNGYYDRMAHLNEAHREKEVSYRCNACELTFKTSGKRAMHVRSAHLPQPRKFACPYCDWLFRTSYELKRHMVKHTGERNFCCTVCGKSYPRSRALRTHLKTHEELICKWCGALFKQRAQLLTHVRISHPDLNDLVPLESEKIPCSASAEAVANVVKRVRKLKENVSARQMRRRRRANNELPEESDRRISKTMMRRNALTILECSTAWAFRWFHSAFFCSYCDEKFVDTAPLREHVHASHISSSPTKRVFSKLTENNMLKVEITNLNCRLCSHSCTTIDTLKNHLTTAHKKKISYEHSDGVLPFKLDENGLRCQICFELFASFSKINEHMNLHYQNYICDACGKAFVSKSRFRTHVQSHEVGSFPCGECDETLSTRAARMCHRLKVHRKGVRYTCPRCSEVFTTYYARAKHLVESHEQLRRDYECTVCGKAFDTSCKRATHCRVAHKPIEKRYECPYCPWYFTRTEESNASDSTIEKVKVKWNWKRKLAEDKANAAVILECSNAVAFRWQRGRFMCAYCPLILPSITDIRLHSNDHKKLDVFDNTKVRNTHPLRVDIADLACNICGEKFDNLEYFKVHLTERHEKVFNLKHGDGLLPFMLAGEEYRCVGCGERCESFMGLLAHMNRHYATHFCYVCGKGYSGKHKLQSHLKCHESGEFGCTKCDSVLPSATAKSRHLAVAHGRRERYRCPLCEEHFVSYHSRLRHLDKVHGKKAEYRCDRCSSIFASGALRNCHVKIVHEVKKNNFLLFLGPRDDNVRWKPTRRYNDHRDNAGIIIECSNACPFRWKRGEFVCAYCPTTFGDFTGVRLHTANHLCRVEALRFVRPVNSIKADITDLQCVLCFESMKDLDELADHLCAGHSKPIVKEFGFGITPFLINGKDFICYHCNKRYDLFTNLNIHINKHDRNNVCCKCGKTFSAPQRLEAHMVTHDGAENLFRCAKCKENFATRKLMSSHMNRKHSPPHRYKCPYCQDKFKTYGDRSKHLKEAHDRNVEYP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -