Pant014740.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pharmacophagus antenor
Gene Symbol
-
Assembly
GCA_018245475.1
Location
DWQX01006532.1:4345-7116[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0069 1.3 11.2 1.3 1 23 82 105 82 105 0.94
2 16 0.031 5.7 9.2 0.1 1 23 177 199 177 199 0.98
3 16 0.00029 0.052 15.6 0.2 1 23 203 225 203 225 0.98
4 16 7.7e-05 0.014 17.4 1.3 1 23 230 253 230 253 0.96
5 16 0.0082 1.5 11.0 0.8 2 23 260 282 260 282 0.93
6 16 0.052 9.5 8.5 7.3 1 23 289 312 289 312 0.96
7 16 0.24 44 6.4 0.2 1 20 470 489 470 493 0.84
8 16 0.048 8.7 8.6 1.0 2 23 519 540 518 540 0.96
9 16 9e-05 0.016 17.2 0.2 1 23 562 584 562 584 0.97
10 16 1.3e-06 0.00024 22.9 0.2 1 23 588 610 588 610 0.99
11 16 8.5e-06 0.0015 20.4 0.5 1 23 615 638 615 638 0.96
12 16 0.0015 0.27 13.3 0.6 2 23 645 667 645 667 0.97
13 16 0.00035 0.064 15.3 1.6 1 23 673 696 673 696 0.98
14 16 0.0052 0.95 11.6 5.4 2 23 703 724 702 724 0.97
15 16 1.1e-06 0.00021 23.2 0.6 1 23 730 752 730 752 0.99
16 16 4.3e-05 0.0078 18.2 0.2 2 23 758 780 757 780 0.96

Sequence Information

Coding Sequence
ATGGTTACATTGGTAAAGCGCAGGGCCGCTGTGTCCTCACCGGCGCCAAACTTTTTTCCTTCGCGTAGTCCTTCGCCAATGTCACTAGGTCGCAGGACGCCCCGATCTGACCTTGAAATTGACGAAAAAGCGGACTTCCCATTATCATCACGGAGCGCGAACAAGCAGGCGGACACCCGTCAAAACGCGCTGACTCTCTTCGAATTCTCCACCGTGTACCCATTCATCTATGGAAATAACAAGTTCAAATGTTTCATATGCTCGCAACCTTTCCTACAGGCAGCCCTGCTTAGGCGTCACATGCACGACACGCACACTTTCGCGCCGTTAAAACGCTTAGTTAACAATCGTAGGGAAAACGTAATCAAAGTTGACGTGAGCGAAATGAGCTGCAAACTCTGCTCGGATAAACCTAAAGACTTACACCAACTGAAGCTGCATTTGAATCAAGATCATCAAAAGCTCATAGATCCGGAGCTCAAGGACAATATTATTCCGTTTAGACTCGAGGGTGACGAAGAGGAAGGCTTCAGATGCGTCATGTGCGACGGGATCTTTATCAAAGTGCGGACCCTCGTTATTCACATGAGTGTACACTTCAACAACTACAGCTGCGAGATCTGCGGCTCCGGTTTCATGACACTGCGGCTACTGAAGAAGCACCTGGAGGTCCACGAGAGCGGCAACTTCCCCTGCGATCGCTGCAGCAAAGTGTTCAATACGTCGCACAAACTGTCGCTGCACATCCGGGGCGTACACCTCAAGCAGTACCCGCGCCGCTGCCCCATGTGCCCGGAGCGGTTCAATTCGAACTACCGACGCACAAAGCACTTGCAAGACGTCCACAACCAGTCGACCCGCGTGCACAAATGCAAGACCTGTGGCCGCGCGTTCAACTTAAAGTATCACCTGGTGTGCCACACCCGTTCCGTCCACCTTCAGGAAAGGAATCACCAATGCAAAGTTTGCCTACAGAGATTCTGGGTCATCAATGTAACAAACTCATCTATAGTACTCAAAGACGATGACGGCTCTGATATTGAATTATCAATACTGAAGAAACCCATATGTATTGATAGTCTGTTTTGTGAAAACGAAGAGGACGTGGACATTGGATCAAAACAAAAAGACGATGATAATTGCTTTGATAAGATACCAATGACTCAAAACGTCGACTTTCAATCTGATAAACCTTTAGTGATATTTCTAAAGGAACCGATATCTTTAGACAGTATTGGAAATGGTACGATGTTATCTTTCGAAAACTCAACGCAAAACGTTACAACGACAGATATAACAAAACCTTTGAGAAGGCACATCACTCGAGAGCCGCCAACGTGGAAACAAAACGCTCTTACAATTTTTGAGTTCTCCTACGTCTATCCATTTCTACACACTAGCAATAAATACAACTGTTATATCTGCTCTAAACCATTCGTAGACACAAATATATTAAGACAACATTCCATAGGCGAGCATAGCTTCGAAGAATTAAAGCAGGAGGTAAATAAGAGGGTTCGGGACAAAATGATAAAAGTGGATATTGTAGAACTTCAATGTAAACTTTGTCATGCTGTTTTggataacttaaataaattgaaaattcatcTCAAAGATCATGGGAAAAACATAGAGCCTGAGTACCAAGATAACGTAATACCGTTCAAGTTAGTTGGCGACCTATTCAATTGTCAAATCTGCGGCGAAAGTTTCCAAAAGCTACGCCTGCTCATCATCCACATGAGCATACACTTTAATAACTACAGCTGTGAAATATGTGGCCGAGTGTTTGTGTCTATAAATCTGTTAAATAGACACCTACAGACCCATACAACCGGAAGCTATCCGTGTGAAAAAtgcaataaagtatttactAATCAATCGAAAAGGATCAGTCACATCAGAGCAGTCCATTTGAAACAATCAATGCGAACTTGTCCCTTTTGCCCTGTGAGATTCAACTCGAACTATCAGCGGAGCAAGCACTTGAGAATCGTTCACAACCAGGCGAGCCTATACAGATGCGAGACGTGCGGCAGGCAATATGATTTGAAATACCAATTGTTTCTACACAGAAGATCTGTTCATATGCAGGAACGGAATCAGGAATGTGGTATATGCCACTCTCGTTTCTTTTCCAAATATTGCCTTTCCAGACACATGTTGACGCACACtggtaataagaaatttaagtgTCAGATCTGCGGGAAAGCTTACGCGAGAAGAAAGAATCTTCTCGAACATGCAAAGACGCATGAGGTTGTCCAAAGTACATGTTCCGTTTGTAACAGAATTTTTAGCGATAACGTAACGTTAATGACACACATGAGTGTGATACACGATGGCATATAA
Protein Sequence
MVTLVKRRAAVSSPAPNFFPSRSPSPMSLGRRTPRSDLEIDEKADFPLSSRSANKQADTRQNALTLFEFSTVYPFIYGNNKFKCFICSQPFLQAALLRRHMHDTHTFAPLKRLVNNRRENVIKVDVSEMSCKLCSDKPKDLHQLKLHLNQDHQKLIDPELKDNIIPFRLEGDEEEGFRCVMCDGIFIKVRTLVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHESGNFPCDRCSKVFNTSHKLSLHIRGVHLKQYPRRCPMCPERFNSNYRRTKHLQDVHNQSTRVHKCKTCGRAFNLKYHLVCHTRSVHLQERNHQCKVCLQRFWVINVTNSSIVLKDDDGSDIELSILKKPICIDSLFCENEEDVDIGSKQKDDDNCFDKIPMTQNVDFQSDKPLVIFLKEPISLDSIGNGTMLSFENSTQNVTTTDITKPLRRHITREPPTWKQNALTIFEFSYVYPFLHTSNKYNCYICSKPFVDTNILRQHSIGEHSFEELKQEVNKRVRDKMIKVDIVELQCKLCHAVLDNLNKLKIHLKDHGKNIEPEYQDNVIPFKLVGDLFNCQICGESFQKLRLLIIHMSIHFNNYSCEICGRVFVSINLLNRHLQTHTTGSYPCEKCNKVFTNQSKRISHIRAVHLKQSMRTCPFCPVRFNSNYQRSKHLRIVHNQASLYRCETCGRQYDLKYQLFLHRRSVHMQERNQECGICHSRFFSKYCLSRHMLTHTGNKKFKCQICGKAYARRKNLLEHAKTHEVVQSTCSVCNRIFSDNVTLMTHMSVIHDGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-