Pant016536.1
Basic Information
- Insect
- Pharmacophagus antenor
- Gene Symbol
- -
- Assembly
- GCA_018245475.1
- Location
- DWQX01007913.1:2027-4372[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.7e-06 0.00067 21.6 5.4 1 23 8 31 8 31 0.95 2 20 0.00033 0.06 15.4 0.0 2 23 37 59 37 59 0.95 3 20 1.1e-05 0.0019 20.1 0.3 2 23 68 90 68 90 0.97 4 20 0.00012 0.021 16.8 2.9 2 23 99 121 98 121 0.92 5 20 0.013 2.4 10.4 2.5 2 23 129 151 129 151 0.96 6 20 3.5e-05 0.0065 18.5 1.7 2 23 160 182 159 182 0.95 7 20 3.1e-06 0.00057 21.8 4.3 1 23 188 211 188 211 0.98 8 20 0.00011 0.019 17.0 1.7 3 23 262 283 260 283 0.96 9 20 2.3 4.1e+02 3.3 0.4 6 23 316 334 313 334 0.83 10 20 2 3.7e+02 3.5 0.1 2 20 342 360 341 362 0.89 11 20 0.024 4.4 9.5 1.6 2 23 371 393 371 393 0.95 12 20 0.0044 0.79 11.9 4.9 1 23 414 437 414 437 0.96 13 20 0.00049 0.09 14.9 0.9 2 23 444 466 444 466 0.96 14 20 2.8e-05 0.0051 18.8 2.2 2 23 473 495 472 495 0.94 15 20 0.0032 0.58 12.3 1.6 1 23 501 524 501 524 0.97 16 20 0.83 1.5e+02 4.7 4.4 2 23 532 554 532 554 0.95 17 20 0.002 0.37 12.9 0.1 1 23 561 584 561 584 0.97 18 20 0.041 7.4 8.8 1.1 1 20 591 610 591 614 0.87 19 20 0.0023 0.41 12.8 2.3 2 23 628 650 628 650 0.96 20 20 1.4 2.5e+02 4.0 0.3 1 10 700 709 700 713 0.90
Sequence Information
- Coding Sequence
- ATGTATCAGAATCAGAACTTGTTCGTGTGCGACCACTGCAAGCGCACGTTCACCAGGAAGTACAACCTGCAGGCGCACATCGAGAACTGCCACACGAACGCGTCGCGCTACTGCGAGGTGTGCGACCAGCGCTTCGGCAGCCCGTCCGCACTGCAGCTGCACCTGGCGCGCGGCCACAACCGCTTCGGTCAGCCGCTGCCCGAGTGCGATCTCTGCGGCAGGATATTCACTAGGAAACAGAATGTCACCTCGCACATGATCACCGTGCATCTGCTCGGCGCGCGGCCCGACATCAAGTGCCGCACCTGCCAGAAGACGTTCACGACCGAGAGGAATCTGAAGCGGCACAACAACCAGCTGCACAATCCGCACGCCGTGCACCCGACTTGCGACGAATGCAAGAGGATGTTCAAATGCAAACAGTCTTTGATAGCGCACATACTGTCCACCCATCGGCCGGACGTGAGGGGCGCGCTGAAATGCAAGATGTGCGCAAAAGTCTACACGAACAATAGGAATTTGAAACGGCACACCGAGATGTACCACGGGCAGAGGGGCGAGTACAGGTGCGACCACTGCCCTAAAGTGTACACGTCCAACCAGAGCCTGAGGCGGCACACGAAGACCAGACACGACCTGAAGGGCGCGCCGCAGCTCAACTGCCAGGGCTGTTCCGCCGTGGTGTTCGGCGCAGAGAACATAAACCGCCACGTGGCGTGCTGCCGCGGGCGAGGGGACGGCTCCGCGGAGCCTACGATAGCCGACTTCGGATCGGAGACAGCGTGCAGCAAGTGCGACAAGCGCTTCGACAGGGAGCCGCTGCTGAGGCACCACGTGAAGACCGAGCACTCGTTCCAAGATTTCTACGAATACTGcaagagatcgctgcttagggTGATGAAGGCGTCCCAGacggagaggaggcacggcttCGGCTGCGAGTGCTGCCGGGACGCGTTCGTGAGCGTGCGCGAACTGAGAGAACACATGCGTGCGGCCCACGGGAAGGATTACCGCCTGACGACGTGCAACGTATGCTACAGTAAGTTCTACAGCAAGGAGGCCATGGTGGAACACGGCAAGGTCTGCCTGCCCCCGCCCGACGTCAACACCTGCGCACACTGCGACAAACTGTTCACCGACATATCCAGCCTGGAGTTCCACACGAGGATCTTCCACCCGCAGGGGCGCGGCCCCGTGCCGTCGGGCAACGCCGACGGGTGTACGGAGCTGGGCTGCTACAAGTGCGCACACTGCGACCGCGTATACTACAGCGACAGGTCGCTGAAGCACCACGTGAAGCTGAAGCATACCGCCGAGCAGGCCGCCCAGTGCCAGTTCTGCGGCAAAGTGTGCGGCAACAAATACTATTTGGCGTCCCACGTGAAGATAGTTCACACGGCGGCCACGTGGTCCAAATGCGACTATTGCGATAAACAGTTCAAATCGAAACGGAACATACGCAGGCACATAGAGTACACGCACCTCGGCATGCAGCGGTACAAGTGCATCGAGTGCGACACGCTGTTCAAGGAGAAGAGGAGCCTGCGGAAGCACGTCAGGATAAAGCATCCGAGCTCGACACTGTTCCCCGAGTGCCACATGTGTCGCAAGCTGTTCGAATCGGCCAAGTCGTGCAAGATCCACATGAAGCTGGTCCATTCGTTCAACGTGAACACCCACCCGTGCGACCTGTGCTCGGTCTCCTTCGATTCCATCGACGCACTCAACGACCACCTGCAGACCGACCATTCGGCCGAAGATCAGATCTACAAATGCGAGGAGTGCAATCTAGTGTTCAAGGGCCACGAGAAGTTCGACAATCACAACGGTGTGATGCATTTCAACCTAGTGTCGAACACGAGACACAAAACTATGCCCCGATGCGTGATATGCATTAAAGACTTCAGCTCGCGGAAGACACTGAAGCGGCACATCAAGAAGTTCCACGAGGACTTCGACGTGGAGGAGCTGGCCAACTACGGCTGGCTGGTGAGGGCGACCAGCGTCGAATGCGACGAATGCATAAAGACCTTCAACGACGACGCCATGTTCAACAGTTTCCAGGAGACGAAGCACACTAGGGAGACCGTCATATTCAAATGTCACGTGTGCACCACTTCGTACAACGCGCTCGAGTACGCGGTGCTGCGGTACAAACTGGTCGACGCGTGCAGGGGCAAGCTGATCCTGAGCGAGCTGTGCACCGCCGAGATGAGCGACGGCGGCACCAGCACGACCTTCGACGCGTCGGAGGCCAACGAGTCGGAAGTGGCGGCgttcaatattaaaatcgaaCCGGACGAGCTGCTGTACGAAATAAAGACTGAACCGGTGTCCCCCTAA
- Protein Sequence
- MYQNQNLFVCDHCKRTFTRKYNLQAHIENCHTNASRYCEVCDQRFGSPSALQLHLARGHNRFGQPLPECDLCGRIFTRKQNVTSHMITVHLLGARPDIKCRTCQKTFTTERNLKRHNNQLHNPHAVHPTCDECKRMFKCKQSLIAHILSTHRPDVRGALKCKMCAKVYTNNRNLKRHTEMYHGQRGEYRCDHCPKVYTSNQSLRRHTKTRHDLKGAPQLNCQGCSAVVFGAENINRHVACCRGRGDGSAEPTIADFGSETACSKCDKRFDREPLLRHHVKTEHSFQDFYEYCKRSLLRVMKASQTERRHGFGCECCRDAFVSVRELREHMRAAHGKDYRLTTCNVCYSKFYSKEAMVEHGKVCLPPPDVNTCAHCDKLFTDISSLEFHTRIFHPQGRGPVPSGNADGCTELGCYKCAHCDRVYYSDRSLKHHVKLKHTAEQAAQCQFCGKVCGNKYYLASHVKIVHTAATWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECDTLFKEKRSLRKHVRIKHPSSTLFPECHMCRKLFESAKSCKIHMKLVHSFNVNTHPCDLCSVSFDSIDALNDHLQTDHSAEDQIYKCEECNLVFKGHEKFDNHNGVMHFNLVSNTRHKTMPRCVICIKDFSSRKTLKRHIKKFHEDFDVEELANYGWLVRATSVECDECIKTFNDDAMFNSFQETKHTRETVIFKCHVCTTSYNALEYAVLRYKLVDACRGKLILSELCTAEMSDGGTSTTFDASEANESEVAAFNIKIEPDELLYEIKTEPVSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -