Pant012542.1
Basic Information
- Insect
- Pharmacophagus antenor
- Gene Symbol
- -
- Assembly
- GCA_018245475.1
- Location
- DWQX01005031.1:3692-7399[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.034 6.2 9.1 0.3 1 23 30 52 30 52 0.98 2 27 0.56 1e+02 5.2 0.2 3 23 81 102 79 102 0.92 3 27 0.58 1.1e+02 5.2 4.2 2 23 123 145 122 145 0.92 4 27 0.00091 0.17 14.0 1.2 1 23 150 173 150 173 0.97 5 27 0.00015 0.027 16.5 1.6 1 23 177 200 177 200 0.95 6 27 0.0013 0.24 13.5 1.7 2 23 203 225 202 225 0.96 7 27 3.1 5.6e+02 2.9 0.7 2 19 231 248 230 250 0.93 8 27 0.004 0.72 12.0 2.4 1 23 302 325 302 325 0.91 9 27 0.00027 0.048 15.7 0.9 1 23 397 420 397 420 0.95 10 27 1.4e-06 0.00025 22.9 2.7 3 23 427 448 426 448 0.96 11 27 1.5e-05 0.0026 19.7 0.4 1 23 453 476 453 476 0.94 12 27 5.6e-05 0.01 17.8 0.3 2 23 482 504 481 504 0.94 13 27 0.0019 0.34 13.0 3.7 3 23 553 573 551 573 0.97 14 27 0.15 28 7.0 0.0 2 23 601 623 600 623 0.91 15 27 0.12 22 7.4 0.8 1 23 643 666 643 666 0.97 16 27 4.5e-05 0.0082 18.1 1.4 1 23 671 694 671 694 0.96 17 27 0.00018 0.032 16.3 2.8 1 23 699 722 699 722 0.95 18 27 0.0004 0.073 15.1 1.0 2 23 725 747 725 747 0.97 19 27 0.0047 0.86 11.8 1.6 2 22 754 774 754 774 0.95 20 27 0.11 21 7.4 2.9 1 23 830 853 830 853 0.93 21 27 6.7 1.2e+03 1.8 0.1 3 23 927 949 925 949 0.90 22 27 8.6e-05 0.016 17.3 0.3 3 23 956 977 955 977 0.94 23 27 0.0048 0.87 11.8 4.6 2 23 982 1004 981 1004 0.93 24 27 0.0037 0.67 12.1 1.6 1 23 1009 1032 1009 1032 0.94 25 27 5.5e-06 0.001 21.0 5.2 1 23 1036 1059 1036 1059 0.97 26 27 0.00046 0.083 15.0 0.3 3 23 1067 1087 1065 1087 0.96 27 27 0.00021 0.038 16.0 0.7 1 23 1093 1115 1093 1115 0.96
Sequence Information
- Coding Sequence
- ATGCCAAGCGCTAATAGACAGAGGAGAGGGAATCTTCTAACTCTGTTCAACAATACAACGTTGATCCCGTTCAAATGGCGGGGGAAATACATGTGTTTTTACTGTGGCGACGATTTGGCGGATTACGATCTCTTGAGGAGGCACACGATGTCTCACGGCGCTTGCTCCGAGGCGGATCGTGCCATTAGACTCGTCAAATCGGGCGATTCCGAAGTTAAAATCGATGTATCGGACATCGCTTGTAAACTTTGCTACGAGACATTTGATAGCTTTGACGATATCGTTAGCCATTTGTCATTAAAACATAGACTGATTTACGACAGAGAGGTTCATTTGGATATAACAACTTATCGTCTAGTTGATTTAAAATGTCTGCACTGTGATCATAGTTTTGACTATTTCAACAAATTGATTATTCACAACAATAATTTTCACCCAATACGATGTTTCGTGTGCGATCAGTGCAATCAAAAGTTTAATAAGAAAAGGGACTTAGATGCTCACTCTAGAGtgcgtcatagaaaattttatagctGTTCGAAATGCCCTCGCACCTTCCAAACTAATTTTGAGttacaaaatcataaaatgaaCGCTCACGCGTCTTCCTGCAACATTTGCTTTAGGACTTTCTCGTCAGCTGCCAAAAGGTTAAAGCACATGAAAAAAGATCACGATTTGGATGGCCTACAATGTGGATTCTGCTTTAAAATTATGACTACAAAACAGAGTTTCTTTCGACATGCATCTTGTTGTACACAAGTCGTTGATGGCGTTGAAATATCTAACAACTCTACAGACATGATTAAAGAAAGCAAACTTACTTTTAAACGTATAAGAACTGATTTAGCTTGCATTATTAATATGTCCACTGCCATGCCATTCAAACATTGCCTGAGTAGGTTTAGATGTTTCTATTGTCCCAAAGACTTTACGGATTGTGATGTTCTGAAACAACATACCGTTTTAGAACACCCTGTGTGTGATAAAGAATTAAAGTGTTTGAAAATACGAAATAGAAACGAGGGacgtattaaaattgatatatctAATCTATCTTGCAGAGTTTGCTACGAGCCATTGCtagatttatgtaatttaacagATCATCTATCTATGGAACATAAGGCCAACATAGACAAGTCTATAGAAATCTACTTACAACCGTTCAAACTTGTAAAAGATAACTTTCATTGTCCAATTTGTGGAGAGATGTACAGATACTTTAGCATGCTACTAAAGCATGTTAGCGTATCTCATACGGACAATGGCAACATTTGCTCTTACTGTGGGCAATGTTTTAGAAGTCAATCAAATCTCAGGGCTCATATATCGCGGAAGCACAAACCCGTCGCATTCAGTTGTCCTGATTGCAATTTGGAATTCACGTccaataataacttaaaaactcATTTGGGCAAAGTGCACGGCACCAAAGCGGTCGTATGTCCTGAATGCAAAGAGAGGTTCGCATCTCGTTACAGCATGCAAAGACATATGATTTACAAACACAGTTCCGGTCACAAATGTACTCACTGCGATGAAATTCAGCATGCCCCGTGCGAGAGTTCCACCTCCGAGAAGAGGAGAAGAAACTTGCAAATTCTATTCAACAATACATCCATTCTGCCATTCAAATGGCGGGGGAGGTGTCTCTGTTTCTATTGCGGGAAAAGCTATGCAGAATATACCGACTTTAAAAAACATACCCGCTCTCATGTCCCTTGCACCACGAAAGATTACTCATTGAAAATGGTTAAGGGGAATCACATAGAGATAAAAATCGATGTCTCTGAAATCTCCTGCGAAATTTGCAGCGAGCCATTCGCAACATTCTATGAAATAATTGATCATTTGATCGAGAAACATAACCTGGTGTACGACAAGTCTATAGACACACTGTTCCAAGAGTACAGGCTTTCGGATTTTCGTTGCCTGTTCTGCGAGCAgcaattcaattattttccgTACTTGGTCAATCACGTGAATAGCGTACATCCTCAGAATAGTTACATTTGCAACGACTGCGGCGTGTCCTTTAACAAAAAGAGAGATTTGGCGTTACATTTGCGTCACTACCATCGTGAAGGGGGATACCCTTGCACCGAATGCTCGGAAAAATTCAAATCTCACAGCTTACTGCGCAGCCACCAAAACGATTTTCACTATAGAAAGTGTAAACGTTGCGGGTTGAACTTTGCTTCGTACAGTCTCTTAATCAAGCATACACAACGCGACCATCCGAACGATGGTAACGCTAAATGTCCGCATTGTTCCAAACAGTTGAACTCGTCGCAAGGCTTAAAACAGCACATGAACAAATGCAAAATCAATAGGCAAGTGAAAGCGGAACAGCCTGCCGACAACAACTTCTCCGACGACAATTTGCTGCAACCGAAGAAGAAGCAAAACATTCTGCAGATACGGCAGAACATCCATTGTGTCCTGAACATGTCCACCGCTTTGCCTTTCAAGTTTTTCGGAAAATATTGTTGCTTTTATTGTTCTAAAAAGTACGTTGAATTCGATGAACTGAAAGAGCACACGGTTTCAGAGCATCCGGTGTGCGATTTGAAATCGAAAAGCATGAAGAAATGTAAAGGGGAAAGGGTAACAGTGAAAGTGGACACAACTGGATTGAGTTGTAAAATTTGCAGTCACCAAATGGATAATTTGGATGTTTTAATAGATCATCTAATATCCCAACACGAGGCCACGTATGATAAATCTGTAACGGGATGTCTAGAACCTTATAAGATGATTAAAGACAATATAGCCTGCCCCTCGTGTCCTAATCGTGTGTTTAGATATTTCGGTATTCTATTGAGACACataaactccgagcatagcaaCAATAATAGAATTTGCGACTTCTGTGGCCGCAGCTTCAAGAGTGTGACCAATTTAAAAGTGCACATTGCTTATACGCATTCGGGTGCATGCGAGTGCGATGTATGCGGCACCAAATACAAGAACCAGTGGTGCCTGAATCGGCACAAAGCGAAGAGTCACAATGCGAAAGACTACAAGTGCCCAAAGTGCCCGGAGCTGTTCCAATCGCAGTACCACAAGCAGAAACATTTGATCGAAGCCCACGACGTAGGCCACAAATGCACGTACTGCGGAAAAATGTTCACCAGGAACTCGTTCATGAAGGACCACATACGCCGGACGCATCTCAAAGAGAAAAATGTGATATGTTCGGTCTGCAATGAGAGGTTCTTCGACAATTACTTGCTTAGGATGCACATGGTCAAACATGAGGGCGAAAGAAAGTTCAATTGTGATGTATGCGGCAAGGCGTTTCTGAGACGGAGTAACTTGAGTTCCCATAAGGATATGCATAAAAAATACGGACATTTGCAGTcgcaaacataa
- Protein Sequence
- MPSANRQRRGNLLTLFNNTTLIPFKWRGKYMCFYCGDDLADYDLLRRHTMSHGACSEADRAIRLVKSGDSEVKIDVSDIACKLCYETFDSFDDIVSHLSLKHRLIYDREVHLDITTYRLVDLKCLHCDHSFDYFNKLIIHNNNFHPIRCFVCDQCNQKFNKKRDLDAHSRVRHRKFYSCSKCPRTFQTNFELQNHKMNAHASSCNICFRTFSSAAKRLKHMKKDHDLDGLQCGFCFKIMTTKQSFFRHASCCTQVVDGVEISNNSTDMIKESKLTFKRIRTDLACIINMSTAMPFKHCLSRFRCFYCPKDFTDCDVLKQHTVLEHPVCDKELKCLKIRNRNEGRIKIDISNLSCRVCYEPLLDLCNLTDHLSMEHKANIDKSIEIYLQPFKLVKDNFHCPICGEMYRYFSMLLKHVSVSHTDNGNICSYCGQCFRSQSNLRAHISRKHKPVAFSCPDCNLEFTSNNNLKTHLGKVHGTKAVVCPECKERFASRYSMQRHMIYKHSSGHKCTHCDEIQHAPCESSTSEKRRRNLQILFNNTSILPFKWRGRCLCFYCGKSYAEYTDFKKHTRSHVPCTTKDYSLKMVKGNHIEIKIDVSEISCEICSEPFATFYEIIDHLIEKHNLVYDKSIDTLFQEYRLSDFRCLFCEQQFNYFPYLVNHVNSVHPQNSYICNDCGVSFNKKRDLALHLRHYHREGGYPCTECSEKFKSHSLLRSHQNDFHYRKCKRCGLNFASYSLLIKHTQRDHPNDGNAKCPHCSKQLNSSQGLKQHMNKCKINRQVKAEQPADNNFSDDNLLQPKKKQNILQIRQNIHCVLNMSTALPFKFFGKYCCFYCSKKYVEFDELKEHTVSEHPVCDLKSKSMKKCKGERVTVKVDTTGLSCKICSHQMDNLDVLIDHLISQHEATYDKSVTGCLEPYKMIKDNIACPSCPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKSVTNLKVHIAYTHSGACECDVCGTKYKNQWCLNRHKAKSHNAKDYKCPKCPELFQSQYHKQKHLIEAHDVGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVICSVCNERFFDNYLLRMHMVKHEGERKFNCDVCGKAFLRRSNLSSHKDMHKKYGHLQSQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -