Pant005983.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pharmacophagus antenor
Gene Symbol
-
Assembly
GCA_018245475.1
Location
DWQX01001588.1:1-9689[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 7.9e-05 0.014 17.4 0.1 3 23 130 150 129 150 0.97
2 19 7.2e-07 0.00013 23.8 1.2 1 23 156 178 156 178 0.99
3 19 4.5e-06 0.00081 21.3 2.7 1 23 184 206 184 206 0.99
4 19 2.6e-06 0.00047 22.0 2.2 1 23 221 243 221 243 0.98
5 19 0.00013 0.023 16.7 0.6 1 23 258 280 258 280 0.98
6 19 3.5e-05 0.0064 18.5 2.6 1 23 295 317 295 317 0.98
7 19 2.8e-07 5.2e-05 25.1 1.5 1 23 332 354 332 354 0.99
8 19 0.00013 0.023 16.7 2.8 1 23 360 382 360 382 0.98
9 19 0.00011 0.02 16.9 0.0 1 23 389 411 389 411 0.98
10 19 8.9e-06 0.0016 20.3 2.1 1 23 417 439 417 439 0.99
11 19 0.029 5.2 9.3 1.8 1 23 446 468 446 468 0.98
12 19 4.8e-07 8.8e-05 24.3 2.3 1 23 474 496 474 496 0.99
13 19 0.033 6.1 9.1 1.8 1 23 503 525 503 525 0.98
14 19 2e-06 0.00036 22.4 1.5 1 23 531 553 531 553 0.99
15 19 0.00037 0.068 15.2 0.7 1 23 560 582 560 582 0.99
16 19 2.2e-06 0.00039 22.3 1.9 1 23 588 610 588 610 0.98
17 19 0.0016 0.29 13.3 0.3 1 20 616 635 616 638 0.93
18 19 3e-05 0.0054 18.7 1.3 2 23 645 666 644 666 0.96
19 19 0.005 0.91 11.7 0.1 1 16 672 687 672 688 0.91

Sequence Information

Coding Sequence
ATGTTCGAACAACAGATCAAAGCTGAACCGATGagCTTCTACAGTTCCCACTCTCATGTCCACTCCGGCCCCCCTACAATAGTACGTTCAGATTCAAATCATGGAGTGTTAAATATGAATCAGCATCATCATCAAGAAGATTCGAAAGATAGCCTCATAGTACAACAACAAGTACAACACCAAGAGCTGTTGGAACAGCATCAACAGCAACAAGAGTTGCAAGCACAAGATGATGAGttgagTTTCAAAGGGATGGATGATGAAGGCGTTGAAATGGATATGGATGGTCAGCAGTGTTCTCAggGCATGGGAGTAGATATGGGTTCAATTCAAGCTAAATTGGAAATGTCGAATGGAGGGCAGCTACCAAGAAACAAACCACAAGCTTGTAAGGTTTGTGGTAAAGTTTTATCATCAGCATCTTCATATTATGTGCACATGAAGTTACACTCTGGAAATAAACCTTTTCAATGCACGGTTTGCGACGCGGCGTTTTGTCGTAAGCCCTACCTGGAGGTCCACATGCGAACGCACACAGGCGAGAGACCGTTCCAATGCGACCTCTGTCTTAAGCGCTTCACTCAAAAGTCCAGTCTGAACACGCACAAACGAGTCCACACCGATGAGCACATGCGCGCGTTGTTGGCGAAGGAGCGGCCTTACCAGTGCGATCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAACACAAACGGGCGCTGCTGGCTAAGGAACGTCCCTACCAGTGCGGCGTCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATTCATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATCCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAGATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGCGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGTCCTTACGCGTGCGGGCTTTGCCCGGCGGCCTTCGCACGCCGCCCCTACCTGGACACTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGatacacacgcgcacgcacaccggCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGAACGCACTCAGTGCAGGGCCGGCCGTTCCAGTGTCTCCAGTGCCCGGCCGCCTTCACTTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACTGGCGAGCGGCCTTACCAGTGCGACGTATGCCTCAAGAGATTCGCACAAAAATCTACACTTAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATCAATGCATGGAGTGCCCGGCCGCGTTCACTTGCAAGCCGTACCTGGAGATCCATATGCGAACGCACACCGGCGAGCGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCAACGCTCAACATTCACAAGCGAATACACACCGgTGAACGTCCATATGCATGTGATATTTGTCAAAAACGATTTGCCGTAAAAAGCTACGTAACAGCTCATAGATGGTCACACGTGGCCGACAAGCCGTTAAACTGTGAGCGGTGCTCGATGACGTTCACATCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCATTCGGCCGCCTCCTGCTACGAGTGCAGCGTCTGCGGGCGGACCTTCGTGCGCGACAGTTATCTTATAAG
Protein Sequence
MFEQQIKAEPMSFYSSHSHVHSGPPTIVRSDSNHGVLNMNQHHHQEDSKDSLIVQQQVQHQELLEQHQQQQELQAQDDELSFKGMDDEGVEMDMDGQQCSQGMGVDMGSIQAKLEMSNGGQLPRNKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALLAKERPYQCDLCQMRFTQSSSLNRHKKIHTEEHKRALLAKERPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFIRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYACGLCPAAFARRPYLDTHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSAASCYECSVCGRTFVRDSYLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01115851;
80% Identity
-