Ptie078661.1
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- -
- Assembly
- GCA_963931995.1
- Location
- OZ008371.1:128502092-128504266[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.15 33 7.4 3.1 2 22 280 300 279 302 0.88 2 11 0.75 1.6e+02 5.2 1.3 6 23 312 329 306 329 0.96 3 11 0.0059 1.3 11.9 5.5 1 23 335 357 335 358 0.96 4 11 0.035 7.5 9.4 1.8 2 23 391 413 390 413 0.94 5 11 1.1 2.3e+02 4.8 0.3 6 23 423 440 423 440 0.98 6 11 0.0039 0.85 12.4 4.0 1 23 446 469 446 469 0.98 7 11 0.049 11 9.0 2.1 2 23 508 530 507 530 0.94 8 11 0.012 2.5 10.9 3.1 1 23 563 585 563 586 0.96 9 11 0.15 33 7.4 1.9 2 23 619 641 618 641 0.94 10 11 0.014 3 10.7 0.4 6 23 651 668 651 668 0.99 11 11 0.00021 0.046 16.4 2.4 1 23 674 697 674 697 0.97
Sequence Information
- Coding Sequence
- ATGTCTCATGGAAACTTGTGCCGTTTGTGCGTGAAGATTTCTGAAGGCCATAGAAGTCTTTATCATGCAGATGGTCATGAAAATGAGGTGTATGAACTTATGATTATATACTTTGATCCAAAGCGTTTTTCTAAGGACAAAGGGAATCAGCTCACGACTATGTGCTTGGAATGTTGGCGACAAATATTCAGTTTCCACAACTTTCAACAATCTGTATATCAGGCCCAAAAGAATCTTGTGGACTGTATTGACACTCATATAAAGTCTGAAATGGATTTTACTCAGGAGCAGGGTAATGCATTTATGAATCAAGGAAAACACCTTGCAAGCCATCAAGAATTTTGTGTTAAATCCGAGGTCGAAGTCCTGCCGGAAGAGGGGTCTGTTTTTAATTCTGGCAATAATCTAGTTGGCGGATTTATGATCACTGAGATAGAAGGAGTTTCGAAATCCAACCATGACATAGCGGAAATTGATGTCACACCAAAAGCCCGATTTTTATCAATGGACAGTTCTCGTACTTTGTCCAGAGAACATATTATTCGAAAGAGTATTATTAATGTTAAAGAAGAGTCAACGATTTCGTTGCCAAAATTAGAGTTAACGGATGTATATTCGGGGGACGATAGCTCTCAAGACGCCCTGTCCGACGAGTATGATGATCCAGAAGATGCTTCCTTGGGCGGAGAATTCAGCGAAAGGGATGATTCAATGGACTTGTCACTATCAAGAGAAAATTCCAAAGGTTTAATCTCAAAGCATTTACAAACGAGAAAAGGATCGACAGTATCGCTAAAGGGCAGTGACGATTTCATAGCTCAATGGAAACCGAGTTTGGAATGCGAATTGTGTTCCGAAGCGTGTTCAACATATTCAATGCTGCGACAACATTTCCACGATAAACATCCACTAGAAAAATGTTACATCATATGTTGTCAACAAATGTTCTCACGTCGTTACAGAATTGAGGATCATATACGACTTCACATGGATCCAAATGCTTTCAAGTGTGAATTATGTGAGAAAGACCATACAAGCCGATATTATCTAATATCGCATATGCGTACGCATCACTTGCAATCAAATGATGGTAGTGGAAAAACATGGAAGAAGACAAGAATAACAGACAAGGAAATGGATGAGCTTATAGCCCAGTGGATGCCCAATTTGGAATGTGTTGTGTGTAAGAAGATGTGTGCGACACTAAAACTACTGCAATTGCATTTCCGACAGAATCATCCCCAGAAGCAGTTTCAAATTGAATGTTGTCAACGAAAGTTGAAGAGACGATATGAAATAGAAGAACACATACGCCTCCACATCGATCCAAATGCTTTTAAGTGCGAATTATGTTACAAACAGTTTAAAGAAGGAAGATATCTACATGCACATATGCGAAGCTTTCATTCCAAGTCCAACGAAAGTAAGAGGAAAAATGCATATCAGAAAAAAATGACTGATACAGAGATGGATGAACTTATATCACATGATGATTTTGCAGACCAAGTAAAATCTTGTTTAGAATGTGTATTGTGTTCAGAGATGTGTTCAACGTATTCACTGTTGCGACAGCATTTTCAGAGCAAGCATCCACAAGAGAAATTTTACATCCTATGCTGTCAACAAAAGTTCTCTTTACGCTATAGGATTGAGGATCATGTACGCCTTCACATTGATCCAAATGCATTCAGGTGTGATTCTTGTGATAGACAGTTCAAGGAAGGCAGGTATCTTCTTGCACATAAACGAAGCCATCATACCGACTCTAATGATGGATCAAAAAAAGCTTCCAATAAGAAAATGAGAACAGACAAGGAAATTGATGATCTTATTTCTCAATGGAGTCCCAATTTAGAATGTGTAGTCTGCAGGATGACGTGCACAACACTAACACTGTTGCAATTGCACTTCCGTCAAAACCATCCTCAAAAGCAATTCCAAATTGAATGTTGTCAAAGAATGTTTAAGAGGCGATACGAAATCGAAGAACACATGCGTCTTCACATTGATCCCGATGCTTTCAAATGTGAATTGTGCAGTACCCGCTTTAGTATGCGAAGAAATTTACTTCAACATATGAGTAGTAAGCACCCCTCTGCAGACagtggaacattttcataa
- Protein Sequence
- MSHGNLCRLCVKISEGHRSLYHADGHENEVYELMIIYFDPKRFSKDKGNQLTTMCLECWRQIFSFHNFQQSVYQAQKNLVDCIDTHIKSEMDFTQEQGNAFMNQGKHLASHQEFCVKSEVEVLPEEGSVFNSGNNLVGGFMITEIEGVSKSNHDIAEIDVTPKARFLSMDSSRTLSREHIIRKSIINVKEESTISLPKLELTDVYSGDDSSQDALSDEYDDPEDASLGGEFSERDDSMDLSLSRENSKGLISKHLQTRKGSTVSLKGSDDFIAQWKPSLECELCSEACSTYSMLRQHFHDKHPLEKCYIICCQQMFSRRYRIEDHIRLHMDPNAFKCELCEKDHTSRYYLISHMRTHHLQSNDGSGKTWKKTRITDKEMDELIAQWMPNLECVVCKKMCATLKLLQLHFRQNHPQKQFQIECCQRKLKRRYEIEEHIRLHIDPNAFKCELCYKQFKEGRYLHAHMRSFHSKSNESKRKNAYQKKMTDTEMDELISHDDFADQVKSCLECVLCSEMCSTYSLLRQHFQSKHPQEKFYILCCQQKFSLRYRIEDHVRLHIDPNAFRCDSCDRQFKEGRYLLAHKRSHHTDSNDGSKKASNKKMRTDKEIDDLISQWSPNLECVVCRMTCTTLTLLQLHFRQNHPQKQFQIECCQRMFKRRYEIEEHMRLHIDPDAFKCELCSTRFSMRRNLLQHMSSKHPSADSGTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -