Ptie080977.1
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- -
- Assembly
- GCA_963931995.1
- Location
- OZ008371.1:189698062-189704958[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.24 52 6.8 0.6 2 21 353 372 352 373 0.93 2 15 7.6 1.7e+03 2.1 2.1 4 23 387 407 382 408 0.86 3 15 0.0009 0.2 14.4 1.3 2 19 419 436 419 438 0.95 4 15 8.6e-06 0.0019 20.8 1.6 1 23 535 558 535 558 0.96 5 15 3e-05 0.0064 19.1 0.8 2 23 566 587 565 587 0.97 6 15 0.027 5.9 9.8 0.0 1 22 596 617 596 617 0.94 7 15 0.38 81 6.2 3.6 1 22 637 658 637 661 0.91 8 15 7.3e-05 0.016 17.9 3.3 1 23 666 688 666 688 0.97 9 15 0.035 7.5 9.5 0.9 1 23 744 767 744 767 0.96 10 15 0.0031 0.67 12.7 4.1 2 23 773 795 772 795 0.95 11 15 0.00051 0.11 15.2 0.8 2 23 799 821 798 821 0.93 12 15 0.012 2.5 11.0 1.7 1 23 827 850 827 850 0.95 13 15 0.015 3.2 10.6 0.4 1 23 855 877 855 877 0.98 14 15 2.4e-05 0.0053 19.4 0.5 1 23 883 905 883 905 0.98 15 15 0.015 3.2 10.6 4.6 2 23 916 939 912 939 0.93
Sequence Information
- Coding Sequence
- ATGTCGTCCTCAATGACTTTTATAAATCGCAGTATTTGTTTATATTGCAAAACAACGTCACAAATTGAAGCTGAAAAagaatttcatgacattttcgaTGAGGTCGGTTTGGAGCTGCAGCTCCCAAGTTtggtggagacattttttaaagtGGATGTTGGGAGAGGGCACAAATGTAAAAAACTGCTATGCGATGATTGTGTCAATCGTCTAATTGAGTTGTTTGACTTGGCAGAACATTGCAAAGAGACAGAGTTGCAACAATCCAAAGGAGAAGAACTACAATTGGAAGTCGGAACGATTATAAACTGCCAGGGAGAAGATGAGGGTCACGAAGAAATTGTGTGTAGTGATAACCGTGAAAATGCTGTGGCTACGGTGATTGAACCTGAAGGGAATAATGACAATTATGTAGTTGAAAGCACGGAGATTCACTTAAATGTGGATGACGATTATGAAGCATCTGTGGAAAATAGTGACCAGCAGTTCTTTGTTTCAGCAAGTAATGCGAACAACGAAGAATGTTCCAGCCAATTGGAGTTTGTTGATGAAACTCCTAATAAAAGTGATCCACAAACTTCAGAGACTTACATCGATAatgttgcaattgaactagagCATCATTTATCACATGATACAACTGAAATCCATGATTGTATTGATGTGGTTCGTCATAGCGACGATGATGGCGGGGGTTTATTGGTAGATTTAGATTCACAAAACAACCAAAATACAGAATATGAAGAAGTGATTCTAGAGGAACAATTCGAAAATGCGGATAATGAATATTTTCAATTGGAAGAAATCCAAGCGCCATCATCGGAAGCTGTGAACATAGATGACGTTAGTCAGGAGGGTGAATACTATGAAGAATACGAAGAAAACACCATGGATGTTATAGAGGAGAACGTTAATGATGAAATAATTGCTATAGAGGAGGAGTATTTGATAGAAGAGACTATTTGCTCCCAAGAATATGACAGTGTGGATTTATCTGAATATCTAGACAGCGCTATAATTACTAAATTTGAAGAATTGGATTTACCTTGGACAATTGAATGTAAATTATGCCTAGAAACTTATAATACGTTTCAAGAATTACTAAAACATTTATGCGTTCAGGAAGTGATAGACAAACAGCGTTATTGTTGCATTATAAAAGACTGCGAAGAAGTTGTAAATGATATGAAATGTCTTGCGAGACATCTGCTTATCAGACACCATGATAATATTGAAAGCCTGGCCATATATGGACGTTGTCCCGAATGCCAAAAGTCTTTTTCGAACATCGTAGATTTGAACAAACATTCATGCTGTGTATTTAAACGTAAGGCTGGCATTCGACATTATTGTCCCGCTTGCAATATGGATTTTCAATCGCTCAAAAGATACGTTTTCCACATGCAATTTCATTTAACAAAGCACCGACCGAAAATTTGTCTCCTATGCGGTTctttgtttaataatgtaattgatTTCTTTGAACATGTGAGCTACAGTCATGAGTCGGAATCGGCACTGGCCTGCATAAGATGTGATcgatttttcaaagaaaaagcTGTATATGACCGGCATATTCAGTGCCACGAATCAAAGACTCTATTTGAATGTCCATATTGCCCCAAAACATATACCAATAGATGCGGTTTGACCAGTCATATGGAAATTTATCACAATCACATGACTAAGCCTATGCAATGTGAATATTGTAATAAAGAATTTGTAATTCAGTCCAGTTATCGCACCCACATGAAGGTTCACATGCCCGAGGTTAACGTTCCGGCCTTTGTATGTTCCATATGTGGACTAATTTCAAGTAATGCAGATGCAATCAAGAATCACATAGAGACAGATGAAGAACCACTTGGTGCCGTGGctgaaataatggaaaaaatcatttCCGTTGCTTATACTTGCGAAAATTGTTCCTTGGATTTCTTTTCGACGCGTCAACTGCATCAACATCGTCAGTCTACCAGCCATAATAGTAAAATGTTTTATTGCCCCATATGTCGCAAAGCGTTTCGAACTTTACAACATATGCGTAATCATATGACCAATCACAAAGATAACGATCAATGGCATAATGAGTTTCCTATTGCACGTTTCTATATGTGTGACATAGGAAATTGTCGGGACGCCTATCCATTGTGGACTTCCTTGTATTATCATAAAAAGCGACACAAAAAAGCGTCAGCCTCAGTGACATCTTCAAAAGAAGACGATCAATACAAATGCCAATTTTGCGAAAAATTGTGTCCAACAAAAATGTCCTTGGCCATACATGTAGCAAGGGTGCATAATAATAGCCATGTCAAGTGTAAACATTGTCAGAAAATGTATAAAACCGATAAGGATTTAGAAGAGCACATAAATCACATGCACATATCGATAGAATGCACCAAATGCCAGagaattttcaaaaatcgccGTAATTTGCTTTCACACGAACAATTAGTTCATAAAAATGAAAAGCGTTACTTTTGCGGCCATTGCTCGAAGGGTTACTATTATAAAAGTGAAATGGAGGCGCAtgagaaaaatGTTCATCCCGATATTTCGTATAAGTGTGATCTTTGCAATTTCATTACCAATTATGCGAAATCTCTAGATATCCATATGGCTAAACATAACAATCAGTTACCATACAAATGTTCAATATGTCCCAAAGCATTTGGACGTAAACAACTTTTGAGTGTTCACGAGAAGAGACATCAAAAGGACAAAGAATTTGTTTGTTGTGATTATTGTGAAAATGGCTGTGATGCTTCATTTGTTACACACTTTCTGTTGAAAAAACATATTCAGCGAAAACATTCTGAAGACAGACAGAAAAGGCCGACCAAACACACGGCGAACAATACCAAAAAGAGTGGATCAGTAATAGTAGTACAAGACGATAATAGTTGTGTAGAATTAATTGTGGGTGAAGACGATGATACCCAACAAACTGCTGGTGTGGATGGAAATGATGATGAATATGAAATACATTACGAGTATGAAGATGAAGATGGCTTAGACGATGAACTGGACGACCAGGAGGAGCGTGAATTTGTAGATGAGGAAGTTGATATGGAAATGGGTTCatag
- Protein Sequence
- MSSSMTFINRSICLYCKTTSQIEAEKEFHDIFDEVGLELQLPSLVETFFKVDVGRGHKCKKLLCDDCVNRLIELFDLAEHCKETELQQSKGEELQLEVGTIINCQGEDEGHEEIVCSDNRENAVATVIEPEGNNDNYVVESTEIHLNVDDDYEASVENSDQQFFVSASNANNEECSSQLEFVDETPNKSDPQTSETYIDNVAIELEHHLSHDTTEIHDCIDVVRHSDDDGGGLLVDLDSQNNQNTEYEEVILEEQFENADNEYFQLEEIQAPSSEAVNIDDVSQEGEYYEEYEENTMDVIEENVNDEIIAIEEEYLIEETICSQEYDSVDLSEYLDSAIITKFEELDLPWTIECKLCLETYNTFQELLKHLCVQEVIDKQRYCCIIKDCEEVVNDMKCLARHLLIRHHDNIESLAIYGRCPECQKSFSNIVDLNKHSCCVFKRKAGIRHYCPACNMDFQSLKRYVFHMQFHLTKHRPKICLLCGSLFNNVIDFFEHVSYSHESESALACIRCDRFFKEKAVYDRHIQCHESKTLFECPYCPKTYTNRCGLTSHMEIYHNHMTKPMQCEYCNKEFVIQSSYRTHMKVHMPEVNVPAFVCSICGLISSNADAIKNHIETDEEPLGAVAEIMEKIISVAYTCENCSLDFFSTRQLHQHRQSTSHNSKMFYCPICRKAFRTLQHMRNHMTNHKDNDQWHNEFPIARFYMCDIGNCRDAYPLWTSLYYHKKRHKKASASVTSSKEDDQYKCQFCEKLCPTKMSLAIHVARVHNNSHVKCKHCQKMYKTDKDLEEHINHMHISIECTKCQRIFKNRRNLLSHEQLVHKNEKRYFCGHCSKGYYYKSEMEAHEKNVHPDISYKCDLCNFITNYAKSLDIHMAKHNNQLPYKCSICPKAFGRKQLLSVHEKRHQKDKEFVCCDYCENGCDASFVTHFLLKKHIQRKHSEDRQKRPTKHTANNTKKSGSVIVVQDDNSCVELIVGEDDDTQQTAGVDGNDDEYEIHYEYEDEDGLDDELDDQEEREFVDEEVDMEMGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -