Ptie016240.1
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- -
- Assembly
- GCA_963931995.1
- Location
- OZ008367.1:300504058-300508142[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.093 20 8.1 0.1 1 23 137 159 137 159 0.96 2 15 0.00057 0.12 15.1 1.6 1 23 225 247 225 247 0.96 3 15 0.089 19 8.2 0.4 1 23 252 274 252 274 0.96 4 15 0.022 4.7 10.1 0.1 2 23 327 348 326 348 0.95 5 15 1.8 4e+02 4.0 3.0 1 23 353 375 353 375 0.92 6 15 0.0038 0.83 12.5 1.5 1 23 419 441 419 441 0.97 7 15 0.062 13 8.7 2.5 1 23 527 549 527 549 0.94 8 15 0.13 28 7.7 1.3 1 23 569 591 569 591 0.91 9 15 0.0024 0.52 13.1 2.1 1 23 596 618 596 618 0.98 10 15 0.0021 0.46 13.3 1.3 3 23 626 647 624 647 0.94 11 15 0.0026 0.57 13.0 2.1 2 23 654 675 653 675 0.97 12 15 0.049 11 9.0 0.2 2 23 684 706 683 706 0.95 13 15 0.0068 1.5 11.7 0.1 1 23 714 737 714 737 0.95 14 15 0.00039 0.085 15.6 2.2 1 23 743 765 743 765 0.93 15 15 0.024 5.1 10.0 0.4 3 23 773 794 771 794 0.95
Sequence Information
- Coding Sequence
- ATGGAAATACAATGTTTGTTGTGCTTGGATTTAAATACGGATTTAGTTAATTGTGTAGATATCTATTCAGACGAATGGAGGGAACAAAATATAGAGAATTTAATAGAGAAATACTTGTGGCCCATGGCTAGCCTAAAATCGCAATCTCGATGGCTTTGCTCAAGGTGCTGGAAAGCATTAGATGAATTTCATCAATTTTATAGACGGATAGAAGAtgctaattttttgtttgaatatttagttAAAACCGAACAGAATATACATATCGAAGAATGTGAAGTAACAGATTTTCTAGAGGATAATCTGGCTGAAACCAGTACAGTATGCGATACTATAATATCGAGTGACACCAATGATAACGATAtgttttcaattcacgaaagtcAAACTGATGTTcaggaaaattgttttaaatgccCATATTGTATGAAAGATCTAAAAGAACAGCAAGCCCTTTTAGATCATATAGCATGGCACGAAGGATATATGAACCATAAACTACCTTTCGAAAATTCTAATTTTGGTGCCTCAAAATATGATCAGAAATTTACGCATTTGTCCCATAAGAAATCACAGGACATTTCTTCAGATAGCGTTTTTGGAGGATCTATGGATTATATTTCACAGGAGAGGGAGAGTGACGAGTCGGTGTctaattcaaattcgaaaatattcAAATGCAAATACTGTTATAAAGTTCTTAAAGATCAACGATTACTGTTGAAGCACACAGCATGGCATAAAGGCAATGTGTATATTTGCGAGATATGCGATTTGCAGTTTCTGGTTGAATCTAAACTGGAACATCACAAACTCATACATACCACAAGGGGAATATCACACTCGCACGATGATAAAACTGATAACATACCTATAGTGGGGATGAATATAACCGTTTCTAGATTGTTGTCCAAAACTCTAGAAAATATGGAGCAACAGAAATTAAATATACAGTCAAATACAATTGAGGGAACAATAGAATGCAAATACTGTTCTAAAATACTAGAGGATCAACGGGCACTTTCCTATCACATAGCGTGGCACAAGGAAAATGTATACTGCTGCGAAATATGTGATCTGAAATTTCttgatttacaaaaatttaaatcgcaCAAATCGGCGCATAATGGGAGGATGACACAATTTTCTAATGAGGAAACTTCAGCATTACGTACAGCTTCACAGGAATTAGAAATGGGAGAAATTGAAACCGACACAACAAGAGCTAGTACAGCATGCGATGACGAAGTAACATTTCATTGCGATATTTGCGACGTAAAGTTTGCTGATGCAGCTAAGTTTTACAATCACAAATCAACTCACGCCTCAAAGGCATACAGTTCTTGTGACTCTAATGGTGAGAGAGAAGATGATTTAATAGAGGAACAACAAGAAGAAGTTGACCATCTACACGAAGCACAAGAAGAAGGTGAAGATGAAACTAACACAAAATCAACCATATCTCTTAACTTGAATTCCAATATAAACATGGAACCTGCTAAATGTGAGTTCTGTAACAAAGACTTAGAGGATGGGCGCGTCCTTTTAAATCACAAAGCATGGCATGAAGGAGACACATTTCACTGTAATGCGTGCGATTTAAAGTTCTTCGATAAATCCAAATTCGAAAATCACGAGTTGGCTCATAGTATGTCAAAGGAGACAACTGAAAGCGATGACGAAGACACTATGCCGCTGGAGTATTTTGTATGCTCACATTGTTCTAAAGTCATAAACAACCGACGGCTCTACTTAAATCACAACGCATGGCATATAGGAAATGTTCACCAATGTGATATATGTGATTTGAAATTTGTAGATAAATTCAAATATGACAGCCATGTGCAGACTCATTTAACGGAACCGTTGCTCGCTTGTCCGGATTGTGGGAAAACTTTTGCTTGCAGGTATGAAGTCAAGCGTCATCGTGATAAAATGCATCGGAATATGTACGTACAAGTTTGTTACATCTGCGGCAAGTCTTATCGTTGCCCCATTTCGTTTAAGCGCCACATAAACAAGCATAAAGGAACCACGGAGCCAAAGCTGCCGTGCGATATTTGTGGCCGGCTATTGAAAGGAAAGAATAGTTTAAGCACACACAAAAAAATCATGCATCCTAAAAGCGGTATACTACCATACGTTTGCGACATATGTTTAAAACCTGCGGCTACCCGGTCAAGATTGAATAGGCATATTGTTGTCTACCATAAGACATTGGGGGACCACAAGTGTCCTGTATGtaataagaattttaaaaaatcgctcgaCTTAAAGAACCATTCCGTTATTCACTCTGCTGAGCCAAAACTGGCATGTGATTGGTGTCCAGAGAAATTTTACGCAACTAGCAATATGTCAAGAcacaaaaagaaagtccatcccAAAGAATATGAAGAATGGAAAAGTAAACTTTATGTACAGTTATGA
- Protein Sequence
- MEIQCLLCLDLNTDLVNCVDIYSDEWREQNIENLIEKYLWPMASLKSQSRWLCSRCWKALDEFHQFYRRIEDANFLFEYLVKTEQNIHIEECEVTDFLEDNLAETSTVCDTIISSDTNDNDMFSIHESQTDVQENCFKCPYCMKDLKEQQALLDHIAWHEGYMNHKLPFENSNFGASKYDQKFTHLSHKKSQDISSDSVFGGSMDYISQERESDESVSNSNSKIFKCKYCYKVLKDQRLLLKHTAWHKGNVYICEICDLQFLVESKLEHHKLIHTTRGISHSHDDKTDNIPIVGMNITVSRLLSKTLENMEQQKLNIQSNTIEGTIECKYCSKILEDQRALSYHIAWHKENVYCCEICDLKFLDLQKFKSHKSAHNGRMTQFSNEETSALRTASQELEMGEIETDTTRASTACDDEVTFHCDICDVKFADAAKFYNHKSTHASKAYSSCDSNGEREDDLIEEQQEEVDHLHEAQEEGEDETNTKSTISLNLNSNINMEPAKCEFCNKDLEDGRVLLNHKAWHEGDTFHCNACDLKFFDKSKFENHELAHSMSKETTESDDEDTMPLEYFVCSHCSKVINNRRLYLNHNAWHIGNVHQCDICDLKFVDKFKYDSHVQTHLTEPLLACPDCGKTFACRYEVKRHRDKMHRNMYVQVCYICGKSYRCPISFKRHINKHKGTTEPKLPCDICGRLLKGKNSLSTHKKIMHPKSGILPYVCDICLKPAATRSRLNRHIVVYHKTLGDHKCPVCNKNFKKSLDLKNHSVIHSAEPKLACDWCPEKFYATSNMSRHKKKVHPKEYEEWKSKLYVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01175624;
- 90% Identity
- -
- 80% Identity
- -