Basic Information

Insect: Phaonia tiefii
Gene Symbol: -
Assembly: GCA_963931995.1
Location: OZ008369.1:37209873-37220410[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0036 0.78 12.5 5.3 1 23 317 339 317 339 0.98

2 11 0.00061 0.13 15.0 0.3 1 21 345 367 345 368 0.95

3 11 2.4 5.3e+02 3.6 5.0 1 23 377 402 377 402 0.97

4 11 0.0021 0.46 13.3 1.3 1 23 412 434 412 434 0.95

5 11 0.0022 0.48 13.2 2.6 1 23 442 466 442 466 0.97

6 11 0.00024 0.053 16.2 1.0 1 23 472 494 472 494 0.97

7 11 0.018 3.8 10.4 0.2 2 23 501 523 500 523 0.95

8 11 0.017 3.8 10.4 0.8 2 23 542 563 541 563 0.91

9 11 3.6e-07 7.8e-05 25.1 0.9 1 23 569 591 569 591 0.98

10 11 0.46 1e+02 5.9 1.6 1 23 599 621 599 621 0.85

11 11 5.4e-05 0.012 18.3 0.1 1 23 627 649 627 649 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0036	0.78	12.5	5.3	1	23	317	339	317	339	0.98
2	11	0.00061	0.13	15.0	0.3	1	21	345	367	345	368	0.95
3	11	2.4	5.3e+02	3.6	5.0	1	23	377	402	377	402	0.97
4	11	0.0021	0.46	13.3	1.3	1	23	412	434	412	434	0.95
5	11	0.0022	0.48	13.2	2.6	1	23	442	466	442	466	0.97
6	11	0.00024	0.053	16.2	1.0	1	23	472	494	472	494	0.97
7	11	0.018	3.8	10.4	0.2	2	23	501	523	500	523	0.95
8	11	0.017	3.8	10.4	0.8	2	23	542	563	541	563	0.91
9	11	3.6e-07	7.8e-05	25.1	0.9	1	23	569	591	569	591	0.98
10	11	0.46	1e+02	5.9	1.6	1	23	599	621	599	621	0.85
11	11	5.4e-05	0.012	18.3	0.1	1	23	627	649	627	649	0.95

Sequence Information

Coding Sequence: ATGCTCAAAGATACCAAGAATGGAAAGTTAATTCTCAAATATTATGAGCAAAACCAAGTACTACATGAAGAACAGCGAAATCTTTTAATTGCTACCATTGCCAAGTATATAGATGCTAAAGAAATGGCATATACCGTATCGGACTGTACACGCATGGAAcaggaaatttgtttaatttttccaaacgaaaaattgGAATATTATACAACTGGTAAgcgtggaaaactgtacaataaaCTTTGCAATTTGAGACGAATATCAAGAGGAATTTTGTGCAGTAAAGAAAATCTCAATGACGAAAACTGTAGTACATTTGtcCCAGAACAGGATTCAGCGTTTGCAGTACAAAGTCTCCGAAGAGAAGATATATCGGCAGATGAATTCGATCTGTACTGGAGAAAATGCTCGCAATTCAGATTTCAACAAATGATTGAATTGAAGTCTACAGCTGAAGTTTTGAGCATGTGGCCAGAATATTCCACTCCTGGTGCATCGAAGCTGATTGAACTCGATTTTAGTCTAAAGTTCCCGGGAGCTAAAGACTTTAAGTCTAAATGGCCGACTTATGAAAATAAAATCTTGAATATGCTCCGAAGCAAGGTGATAAGTGCAAACGTTTCAAAACAGTTACATGATTTGGTGCAGTGTGATGAAGAGTCTAGAGCGTTTCCAATTATTTGGTTTCTTCACCATTTATTTCCACCGCAACAGAAAGCAGTTTCCGATTACAATGGTGCAAAAATTCGCAAGAAATTTACTGTTTCGGACTCGCAAAATTCTTTTGCAATTTTATCGCGTTCGCAGGAAGAACTTAACATACAGATAAATCTCTTAAAAATACAGCAGCTCAGCATACAACCAAAACTACTCATCATAGGAGATATCATgaaaTCTCTTACAGACTCAGATTCTGCATCACCCGTTTTGAAACGAAAAACATCGTCGAGCTTTCGATGTGACATTTGTTCGAGAAAGTTTCGGTTTCAACATCGCTTGGACGCTCACAAACGAAGGCATGAAGGACAACGAGGATATCCCTGTACCCGCGGAAATTGTGAACGTACATTCAATCGATTAAGTTATTTGCAACAACATCTCAACGACCGCGACGGTATTCCACGTACAAACTACAAGTGTGACAGGGACAATTGCAAGCAGTCGTATAAGTGTAAAACTGGATTAAGAGTGCACAACCGTAAATATCACAGTGAAAAACCACAAAAATCTGGGTTTCACATGTGTGAAACCTGTGGTGTCGTTCTCACAACCTCTCGATCTCTTAGGAATCATCGTTTTATCCATGTCGATAAAACTGAATGGCCATTTGTTTGTGACGTGGAAGGCTGTTCGAAAAGATTTAGAATTCGGCATCAACTGAAGATTCACAAAAAACGTCACGCGTGCATAAAGAACTACGCCTGTCCCCATTGCGATATGCGATTTGTCGCTCGAACTAATATGAATACCCACATCAATTACCATACATGGGAAAGAACCTGGTCATGCGAATTTTGTCCACAAGTTTGTAATGCTCCGGCTACCTTACGAGCTCATATTCAAAATAAACATGGACAACAAGCAAGTATAGATCCGGCATCTGAAGTTAAACGGACTCGCCGACTTCAGTGTAGTTTTTGCGACAAAACTTTTCGTACGGTCGTAggaaagaaatatcatgaaatgaTACATACAGGGGAAAAGCCTCATGTCTGCGATGAATGTGGTAAAAAGTTTAGATCAACGCCAGCTCTCAATGTCCACATGAGAACACACATGAAAGATGTACCTAAAGCTTATGTTTGCCGTACATGCGGTCGTGACTTCTTAAATTCACTGATCCTAAGACATCACGAAATGAAGCATACGGGAGAAAAACCATATAAATGTGAAGAATGTGGTATCTCATTTAGATGGCCTAATAATTTGACAAGGCATTTGGGGCTGCACGAACGGGATAGGAAAAATGAAAGTAAGGAAGCGACAAACGTTGATGCAATGGTTGAAACCAATGACGTTTCGAAAGGCCACTAa
Protein Sequence: MLKDTKNGKLILKYYEQNQVLHEEQRNLLIATIAKYIDAKEMAYTVSDCTRMEQEICLIFPNEKLEYYTTGKRGKLYNKLCNLRRISRGILCSKENLNDENCSTFVPEQDSAFAVQSLRREDISADEFDLYWRKCSQFRFQQMIELKSTAEVLSMWPEYSTPGASKLIELDFSLKFPGAKDFKSKWPTYENKILNMLRSKVISANVSKQLHDLVQCDEESRAFPIIWFLHHLFPPQQKAVSDYNGAKIRKKFTVSDSQNSFAILSRSQEELNIQINLLKIQQLSIQPKLLIIGDIMKSLTDSDSASPVLKRKTSSSFRCDICSRKFRFQHRLDAHKRRHEGQRGYPCTRGNCERTFNRLSYLQQHLNDRDGIPRTNYKCDRDNCKQSYKCKTGLRVHNRKYHSEKPQKSGFHMCETCGVVLTTSRSLRNHRFIHVDKTEWPFVCDVEGCSKRFRIRHQLKIHKKRHACIKNYACPHCDMRFVARTNMNTHINYHTWERTWSCEFCPQVCNAPATLRAHIQNKHGQQASIDPASEVKRTRRLQCSFCDKTFRTVVGKKYHEMIHTGEKPHVCDECGKKFRSTPALNVHMRTHMKDVPKAYVCRTCGRDFLNSLILRHHEMKHTGEKPYKCEECGISFRWPNNLTRHLGLHERDRKNESKEATNVDAMVETNDVSKGH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -