Ptie017203.1
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- -
- Assembly
- GCA_963931995.1
- Location
- OZ008367.1:326828657-326832435[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00034 0.073 15.8 4.8 1 23 249 272 249 272 0.95 2 13 2.5 5.3e+02 3.6 2.8 2 23 295 317 294 317 0.94 3 13 3.4 7.3e+02 3.2 3.1 1 23 324 347 324 347 0.93 4 13 0.015 3.2 10.6 0.1 3 23 449 470 449 470 0.98 5 13 0.00049 0.11 15.3 1.1 1 23 491 514 491 514 0.96 6 13 2.1 4.6e+02 3.8 4.8 1 23 565 588 565 588 0.95 7 13 0.00033 0.071 15.8 0.5 2 23 664 686 663 686 0.96 8 13 0.00041 0.089 15.5 3.3 2 23 693 715 692 715 0.94 9 13 0.011 2.5 11.0 3.9 1 23 733 755 733 756 0.95 10 13 0.0023 0.5 13.2 2.1 1 23 762 784 762 784 0.92 11 13 5.9e-06 0.0013 21.3 2.7 1 23 790 812 790 812 0.99 12 13 3.7e-07 8e-05 25.1 1.7 1 23 818 840 818 840 0.98 13 13 0.00013 0.029 17.0 0.3 2 21 847 866 846 870 0.89
Sequence Information
- Coding Sequence
- ATGtgtgacatttttcaaaaaacgtGCCGCACTTGCCTACAAAATGATTCGGATGCAGTTTCAGTTAATAAGTTCAGCTCATATTCCACCCCAAGAGTAACTTATGCAGAAATTCTTAAGGACATTGCCCGATTGGAGtttagTGGCAACCAATCATCCAGCATGCCCCAACAATTGTGCTTCATCTGCTGCCGTCAGTTGCGAAAGGTGTATATGTTCGTAAAGCAGGCTAGGGAATCGGAAGATAAACTGTCCaaaatgttggaaacacaatgcgAATTAGTAACAGTGTTCCCTAATATTGCAGTCGAAGCACAGTTAGGTGTAAAAAAAGAAGATAGCGATGAAATTACACTTGAGGAACATACATTGACAAGTGGAGATCCGAATTTGGACACATTGTCTGCCAAGCCAGCTTTCTTGGAAATTACACTCGACAACCAAAAGTCTGTTGAAGATGCGGCTTTGGGACAAATACGTGACAATTTAAATACTTCATATATTTATAATGAGTTGGAAAATAGTAATGATCTTCACGATAATAATGAAAAAGAGGATTATTACCATGTTATTGACACCAGCAATACTTCGTCAAAAATAAACCTTATAGAAACGGATAAAGAATTTATGAATACAAAAGACATCCTGGACATAAGCAATTCTTGCgatgaattatatttaaaatctgAACAGGAACTGTCGGTCGATGAAACGGATGAGCTGAAACCACGAAAAAGCCTTCAATATAAATGCGACCATTGTTCTCGTCAATATAGTGACAAATACAATTTAAGATATCATCTCATATATAAACATCAAATCGATTATAAGTCTATAACTCCCCAGAAAGATAAACAGCGATCcaccgaaaaaataaaaatcaagtgTCGATCGTGCGATTATACGGCAAATACTCATGCTGCTTTACATTATCATACTCGTGCAAAACATGGTTCTGAAGAggataaatttaaatgcaaattctGTCCGTAttcaaatctaaagaaattttCATTGTTGGCCCacatgaaaaagtttcatttggCAAGAATAAAgtcgttaaaaaaaatcaagggaACAAGGAAAGAATCAGGAAAAACGTTAAGGAAATTAAATCGACACTTTTCTATTGAGGGTACTGCGTCCGCAGAAGAAAATTCTGAAGATCCTATTGACAATGATACTGGCGAGGATTCTAGCGAATGTTCCAGCGGTGACGAAGATCTTATCAGAgacattttaaatatcaaaaagaGAATGCCAAAATCAAAAACAGCGGAAAGTGATAACCTAAACGACGCTGAAGAAGTGCCGAAAAATAATGTGCCCTTAGAAGAAATTGGTTGTACTATGTGTCCGTACGTTCTTAACAGTCCTGGGAGCATGCTTAGCCATATGCAGACACAACATACCGATGAGTCTATTTTCGTTCAGAATGATTCATCAAAACCGGAAATTAAGCCGCAAATCTATGTTTGTGATCAATGTCCTCGTACATATGCCGACAAAAACAGATTTAAAACCCATATAAGAGATAAACATGGAATTGATTTTAAGGATTTTCTGAAAAAGCAACATAAATTGTCATTAGAAAACAAAGTCATTAAATGCAAGTTTTGTGAATACACGGCAAATACTGCAGCAGCCGCACATTTTCATATGCGCTCAAAGCATGGAACTGAAGAGGATAAATTTAAGTGTAGTTTTTGCTTGTacacaaacttcaaaaaattcagTCTGCTGAAACATATGAAAACGTCGCATTTGGCTATAATTAAAACGTTGAAGACACAAAGAAATTCGGGCACGAAATCAACCGAGGATCTTATTAATTCAATTCCTAAAATCCAAGGATCTAAAAGCGGAACAGATAACAAACCCAATGAATGCAGCGAAGCATGTTCTAGTGGCGATGAAGAATTTATAAGAGATATTTTAAACATGAAGAAAAGAGGTGGGAAAGCAAATATCACGAAAACATTTGCCATACGTTGTGATGAATGTGGCAATGTGTATAAAGATTCTCATGCTTTAAATATACATAAGCGCAATGTACACGGCGAGCACAGCTATAAACCATGCCCCCAATGTCATaggaaatataaaagaaattatgaCCTAAAACTTCATATATTACATGCACATACACCAAATTATGTCGATCCAAAACAGCCGCCTAAAATACGCGAAAAGCGCTTTATGTGTACAGAATGTTCTTACATTTGCGCCACCTCAACTCTTTTGACAATCCATACAAATCGTCATCATACTGGAGAAAAACCCCATAAATGTAATGTTTGTTCTAAATCATTTGTTGTTGCATTCGATCTAAAGACCCACAGCTATTTACATACGGGCGAAAGACCATTTCAGTGTCCCGTTTGCTCCAAAGGTTTTCGTGATAGATCGCATATGCTCAAACATAAACGGATACATAGCGAAGTGAAACCATATAATTGTAGTGAATGTGGTAAGGGATTTACTAAGAATTATAATCTAACAATACATAAACGCACACATATGAAAGGACAAAAACTAAATTGCTCGGTctgtggaaaatttttcaaagataGAGCACAATTAAGtattcatcaaattaatgaatatcATCACGGCGAGGCGGTATAA
- Protein Sequence
- MCDIFQKTCRTCLQNDSDAVSVNKFSSYSTPRVTYAEILKDIARLEFSGNQSSSMPQQLCFICCRQLRKVYMFVKQARESEDKLSKMLETQCELVTVFPNIAVEAQLGVKKEDSDEITLEEHTLTSGDPNLDTLSAKPAFLEITLDNQKSVEDAALGQIRDNLNTSYIYNELENSNDLHDNNEKEDYYHVIDTSNTSSKINLIETDKEFMNTKDILDISNSCDELYLKSEQELSVDETDELKPRKSLQYKCDHCSRQYSDKYNLRYHLIYKHQIDYKSITPQKDKQRSTEKIKIKCRSCDYTANTHAALHYHTRAKHGSEEDKFKCKFCPYSNLKKFSLLAHMKKFHLARIKSLKKIKGTRKESGKTLRKLNRHFSIEGTASAEENSEDPIDNDTGEDSSECSSGDEDLIRDILNIKKRMPKSKTAESDNLNDAEEVPKNNVPLEEIGCTMCPYVLNSPGSMLSHMQTQHTDESIFVQNDSSKPEIKPQIYVCDQCPRTYADKNRFKTHIRDKHGIDFKDFLKKQHKLSLENKVIKCKFCEYTANTAAAAHFHMRSKHGTEEDKFKCSFCLYTNFKKFSLLKHMKTSHLAIIKTLKTQRNSGTKSTEDLINSIPKIQGSKSGTDNKPNECSEACSSGDEEFIRDILNMKKRGGKANITKTFAIRCDECGNVYKDSHALNIHKRNVHGEHSYKPCPQCHRKYKRNYDLKLHILHAHTPNYVDPKQPPKIREKRFMCTECSYICATSTLLTIHTNRHHTGEKPHKCNVCSKSFVVAFDLKTHSYLHTGERPFQCPVCSKGFRDRSHMLKHKRIHSEVKPYNCSECGKGFTKNYNLTIHKRTHMKGQKLNCSVCGKFFKDRAQLSIHQINEYHHGEAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -