Ptie017224.1
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- -
- Assembly
- GCA_963931995.1
- Location
- OZ008367.1:326978410-326980058[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 3.9e-05 0.0084 18.7 0.8 2 23 247 269 246 269 0.95 2 8 2.5e-05 0.0054 19.3 3.8 2 23 277 299 276 299 0.96 3 8 0.033 7.2 9.5 9.9 1 23 315 338 315 338 0.96 4 8 4.5e-06 0.00096 21.7 1.0 3 23 366 386 365 386 0.98 5 8 0.00011 0.024 17.3 1.6 1 23 392 414 392 414 0.98 6 8 5.7e-07 0.00012 24.5 2.0 1 23 420 442 420 442 0.99 7 8 1.4e-05 0.0031 20.1 2.1 1 23 448 470 448 470 0.99 8 8 0.00032 0.069 15.9 3.0 1 23 476 500 476 500 0.91
Sequence Information
- Coding Sequence
- ATGGATAGACAGGCAATAAACAAGTGTCGTACATGTTTTAACCAATCAAATGAGTTACATTCTTTAAAGATGCCGGCGATTGACGAACCTCCAAGAAAAATATCGTACGCAAAACTTTTGAAGGAGGTGACCAAAATAAATATTGCGGACGACAAAAACAGTAATCTGCCGCAGCATATATGCGCCTGTTGTTCTCACAAATTAAAGTTGTCACACGCATTCATAAAACAGGCCCAGGAAGTCGATAAAGAGCTATGGGGCCAGCTGAATCATAACCATACATTAGATTGTTTGGAAGAGTCAGAAGTTGACATACAAAAGTGTTTAGAGATTAAAATGGAAAGTTATGAAGATAATGAGGAGCATAATACAAATAACGTGCCAGCACCAGTTACAAGCGAGCTGCCTAATTTAAAACCCAAAATGATAGATGTTACCGAAAGTAAGATTGTGAAAGAGATTCAACAAATTGGTGCAGAAAATATTGAGGATATACATCTGGATGACTCCAATGATCTAGATGatttaaattcaacaaataaTGGCATAGGGGGTTCAGAATGCGACACGGATGACAATGAAGTGTTATCGTCAATTGTCTTTAACGAGCGAAGAAAAGACGACAATTATGAATCAGATAATCTAAAGGGTGCCAAGAATGTGGGTGCATCCACACCGCACCacatagtttttaacaaaaagttaaCTCAAACAGACAAAGATATCGACATTGCAGTACCATGTCTGCagtgcaataaaatttttaataactccAAAGAGTTATCGCGTCATCTTCGAAATACTCATGTTCCAGAAGATCGAAAATGTGCTTGTCCTGTATGTGGTGCAAAATTCACTCGGAGTTGTAATATGTATAAACATATGAGGACGTTGCACGAACCAGATTCGGTTAAAATGCTACTACCTACCAAGGAAAAAACACACGAGTGTGTGAAGTGCCATCGCAAGTACACAAAAAAGAAACATCTTAAttatcacattaaaaataaacacgACAAGGAATCAGAAACTAATGAGCAAAATCTGCGCGAACCGAAAAAGGGTTCCAAGAAAAAAACTGAAGTTCGACCTTTATGTTTCATTTGCGGTGGATCATTTTCCAATAAGGCTCATTTGATTGTTCATATGAGGCGTCACACAGGTGAGAAGCCTTTCAAATGTGACCTTTGCGATAAAGCATTTCCACGTATATCAGATTTAACCTGCCATCGACGAATCCATACTGGGGAAAAACCATATAAATGCAAAATATGCGAAAAAACTTTCCGGGTTTCCACTAAATTAGCAACACACATGCGTTCACACACGGACGAAAGGCCTTATAAATGTTCGCAATGTGTACGAAGTTTTAAATATTCCAAAGATCTGAATATACATACTAGAATTCATACCGGGGAACGCCCGTACTGTTGTACATTCTGTGGCAGTACGTTTTCCCAAAGTAACTCGCTTAAAGCACATCGCATGAAATTGGGTCACatagaaaatatgtaa
- Protein Sequence
- MDRQAINKCRTCFNQSNELHSLKMPAIDEPPRKISYAKLLKEVTKINIADDKNSNLPQHICACCSHKLKLSHAFIKQAQEVDKELWGQLNHNHTLDCLEESEVDIQKCLEIKMESYEDNEEHNTNNVPAPVTSELPNLKPKMIDVTESKIVKEIQQIGAENIEDIHLDDSNDLDDLNSTNNGIGGSECDTDDNEVLSSIVFNERRKDDNYESDNLKGAKNVGASTPHHIVFNKKLTQTDKDIDIAVPCLQCNKIFNNSKELSRHLRNTHVPEDRKCACPVCGAKFTRSCNMYKHMRTLHEPDSVKMLLPTKEKTHECVKCHRKYTKKKHLNYHIKNKHDKESETNEQNLREPKKGSKKKTEVRPLCFICGGSFSNKAHLIVHMRRHTGEKPFKCDLCDKAFPRISDLTCHRRIHTGEKPYKCKICEKTFRVSTKLATHMRSHTDERPYKCSQCVRSFKYSKDLNIHTRIHTGERPYCCTFCGSTFSQSNSLKAHRMKLGHIENM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -