Basic Information

Insect: Phaonia tiefii
Gene Symbol: grau
Assembly: GCA_963931995.1
Location: OZ008371.1:177133443-177135899[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.035 7.5 9.4 3.8 2 23 267 289 266 289 0.95

2 10 0.54 1.2e+02 5.7 0.2 6 23 298 315 298 315 0.96

3 10 8.3e-06 0.0018 20.8 2.1 1 23 321 343 321 343 0.98

4 10 8.2e-07 0.00018 24.0 2.4 1 23 348 370 348 370 0.98

5 10 5.8e-06 0.0012 21.3 0.4 1 23 378 401 378 401 0.97

6 10 0.0032 0.68 12.7 0.8 2 23 408 429 407 429 0.97

7 10 0.037 7.9 9.4 0.0 2 23 445 467 444 467 0.92

8 10 0.011 2.4 11.0 3.0 1 21 475 495 475 498 0.96

9 10 1.8e-08 3.8e-06 29.2 1.4 1 23 504 526 504 526 0.99

10 10 0.00035 0.075 15.7 2.0 3 23 534 555 532 555 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.035	7.5	9.4	3.8	2	23	267	289	266	289	0.95
2	10	0.54	1.2e+02	5.7	0.2	6	23	298	315	298	315	0.96
3	10	8.3e-06	0.0018	20.8	2.1	1	23	321	343	321	343	0.98
4	10	8.2e-07	0.00018	24.0	2.4	1	23	348	370	348	370	0.98
5	10	5.8e-06	0.0012	21.3	0.4	1	23	378	401	378	401	0.97
6	10	0.0032	0.68	12.7	0.8	2	23	408	429	407	429	0.97
7	10	0.037	7.9	9.4	0.0	2	23	445	467	444	467	0.92
8	10	0.011	2.4	11.0	3.0	1	21	475	495	475	498	0.96
9	10	1.8e-08	3.8e-06	29.2	1.4	1	23	504	526	504	526	0.99
10	10	0.00035	0.075	15.7	2.0	3	23	534	555	532	555	0.96

Sequence Information

Coding Sequence: ATGGCAGAGTGCCTGCTGTGCTTGCAATCAGATGGCGCAATAGAAAAATGTATACAGGTGGATTCAACAGAATGGAACGAGTTCGACATAAAGAAACTAATCGATAAACATTTATGGCCcataGACACAATTAAAGAGAACTCATGGCTCTGCTCCCCTTGCTGGGAGGAATTGAAAGATTTCCACAAATTCTACAATCGTATAGAGGAAGCTCATAACGATTTCAAATCGTTGCTAAAGTCTGAAACAGATCCTTTAGAGGAAGATAATAAACCTAAAGATTTGCAATTGGAAATGCTTTTGGAGCCGGAAATTATTATTGGGCAAACATTGGAAACTCCTATTGTTATCAAACAGGAAAGTGACGAGCCTACTGTTGTGCCGTTAACCGCCACCCTAAAAGACAAGGCCAATAAAACTGATGATGTTATATCTGACCGAGAATTTCTTGATGATCCTGATTTTGATGATGATTTTGGGTTTAGCTGTGATGATAGTGATAGTGACGACAATATGCCTTTAATATATAGACTCAAGAGCGATAAAACCGCAGGCAAGTCGTTGACAGAAGCGAAATCAAAATCGAAAGATGATGATAGTATGGAAAAAGATGGCGACGATGACGACAAATCAGAATCAGATCCAGATCCTTTACAGCCAAATGACGAAAGTAAAAGGAAAAAGTCGAAAAGCAAACGTTCTGCTTTAGACAAATCGAATATGAGTCGCAAATCCTACTATACACCGAAAACCAATCGTCTGGAACATGATAAATTCCTTCAAGAACATTACAAAATCACCTGCAACAAATGTCATCTGCCCTTCGATACATTCCCACTGCTGTGTAAACACTACAGTAAAGAACACAATGAGCGTGGTTTTGTCACCTGCTGTGAGATGAAGTTTTTCGATCGCAGCCTTTTAGTTGATCACATTAATTTCCACTTGAATCCGGAGTATTTCAAATGCAAAGTGTGCGGCAAAGTGTTGACTCAGAGGCGTTGCCTTTGGGCGCACATGAAGTTGCACGAAGAGAAAAAGTTCCAATGCGATGTATGTAATAAGAAATTTGTACAGAAATCCAAACTGGAACGACACAAGTTAACCCATATGTCGCAAAAAGAGAAAGAGTATGCCTGCAGTGAGTGCGGTAAATTCTTTGGCAATAAATACGTCCTTACGCAACATCAACGTGTCGTGCATCTTAATATTTATGCAAAAGTTTGTGAGTTTTGTGGTCAAACGATGCCCGATTCCAATTCATTCAAACGCCATATGGAAAAACATGAAATGAAATCTGAAATTAAATCCTCAACACCCTCGACATCAGTTAAATGTGAAGAGTGCGGTCTTATATTAGCAGGACCGCTGAATTTGAAACGTCATCGTGATCTGCAACACCCTGTGGGTGGTAAACGTGATTACACTTGTCACATATGCCTAAAGGTATCACCGAATATGAGAGCCCTTAAGAAGCACATACGATGTACACATGAAATGGGCTACAACTATAAGTGTACGATGTGTGAGAAGGCGTTTAAGAGATCCGACAATTTGAAGGCCCATATGTCTACACATACGGGAACTCCTCTGTACGGCTGTCAATGGTGCCCGAAGACTTTTAATTCCAATGGCAATATGCACAATCATCGAAAGAAAGCTCATCCCGTTGAGTGGGAAGAAGCAAGACGTAAAAAGTATTCGGGTAATCTTCCACCGAACTTTAAACCGCCTGTTACCACAAACAATTGCTATAACTATTCATTACAACTAGATACTATGAACTAA
Protein Sequence: MAECLLCLQSDGAIEKCIQVDSTEWNEFDIKKLIDKHLWPIDTIKENSWLCSPCWEELKDFHKFYNRIEEAHNDFKSLLKSETDPLEEDNKPKDLQLEMLLEPEIIIGQTLETPIVIKQESDEPTVVPLTATLKDKANKTDDVISDREFLDDPDFDDDFGFSCDDSDSDDNMPLIYRLKSDKTAGKSLTEAKSKSKDDDSMEKDGDDDDKSESDPDPLQPNDESKRKKSKSKRSALDKSNMSRKSYYTPKTNRLEHDKFLQEHYKITCNKCHLPFDTFPLLCKHYSKEHNERGFVTCCEMKFFDRSLLVDHINFHLNPEYFKCKVCGKVLTQRRCLWAHMKLHEEKKFQCDVCNKKFVQKSKLERHKLTHMSQKEKEYACSECGKFFGNKYVLTQHQRVVHLNIYAKVCEFCGQTMPDSNSFKRHMEKHEMKSEIKSSTPSTSVKCEECGLILAGPLNLKRHRDLQHPVGGKRDYTCHICLKVSPNMRALKKHIRCTHEMGYNYKCTMCEKAFKRSDNLKAHMSTHTGTPLYGCQWCPKTFNSNGNMHNHRKKAHPVEWEEARRKKYSGNLPPNFKPPVTTNNCYNYSLQLDTMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -