Ptie016245.1
Basic Information
- Insect
- Phaonia tiefii
- Gene Symbol
- ZBTB41
- Assembly
- GCA_963931995.1
- Location
- OZ008367.1:300535884-300551875[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.7 3.6e+02 4.2 1.1 1 21 222 242 222 245 0.86 2 18 1.6 3.4e+02 4.2 2.4 6 23 254 271 254 271 0.99 3 18 0.26 56 6.7 2.7 2 23 348 370 347 370 0.88 4 18 2.7 5.8e+02 3.5 2.0 6 23 380 397 380 397 0.98 5 18 2e-05 0.0043 19.7 2.7 1 23 403 425 403 425 0.99 6 18 0.29 63 6.6 2.5 2 21 558 577 557 580 0.88 7 18 0.065 14 8.6 5.2 1 23 613 635 613 635 0.98 8 18 0.00062 0.13 15.0 1.7 1 23 640 662 640 662 0.98 9 18 8.2e-06 0.0018 20.9 0.9 1 23 667 690 667 690 0.95 10 18 0.0075 1.6 11.5 1.0 1 21 798 818 798 821 0.90 11 18 0.0001 0.022 17.4 0.3 1 23 853 875 853 875 0.97 12 18 0.11 25 7.8 4.6 1 23 880 902 880 902 0.98 13 18 2.1e-05 0.0045 19.6 0.1 1 23 910 933 910 933 0.95 14 18 0.0013 0.28 13.9 1.5 3 23 941 961 940 961 0.98 15 18 0.0036 0.77 12.6 0.1 1 23 969 992 969 992 0.96 16 18 0.005 1.1 12.1 3.3 1 23 1000 1023 1000 1023 0.98 17 18 6.7e-06 0.0015 21.1 1.7 1 23 1029 1051 1029 1051 0.97 18 18 1.3e-05 0.0028 20.2 1.8 1 23 1057 1080 1057 1080 0.97
Sequence Information
- Coding Sequence
- atggccgaatcggctgccgctacatccctgGCTACCCTCAAATCCAATTCATCATGGCTTTGTTTGACATGTTGGACATTTATACACGAATTTCATCAATTCTATAGACGCATCGAGAATGCTAATCTGTATTACAAAGGTTTAGTAAAAGCTGAAATTGAAACAGAAATTGAAGATCCCACATTGATACCGGAAAATGTTATCATACCTGAGACAGTATTGACTGAAGATGCTGTTCATAACAGTGACATTGATGAAACGTATGAAAATAGTGATCATCTATTGGAATCAGAAAAGACAATTGCAGAAGATGACTTTGCAACAAAATGTGAAGGAATCGGTTCAAGTAACACTAAATCGGTCGATTACTATTGTCAAATAAACAAGAACGTCAATGACAGAAATCCTCTTGAAGTTTCTACAACAGAAGACTCACAAACGTGCGAAATAATAAAAGCCAATCAGATATTGCAATCAAATACTTGTGCAGAAGAATACAACGAACAacatttagaaaatgtttttgatgtgcCAATATATGATAGTGGCGATTCTATTGCAGATTCTTGTAATAGTGAAACCGCAAAAACTAAAAGTCAAATTAAATTTCCAGAAAAAACGAATCGAGAGGACTACAATGAATTTCTTGCTAAACATTATACATTTTCGTGCATCATATGCCAAAAGTCATGCAACTCATTCCCTATGTTGCGACAGCATTTTGCGGCAGTACACAAAAGGGAAGCATATGTCATATGTTGTGGGAAGAAAATTAAAACACGCCGATGCCTAGTTGATCACATCCACACCCACTTTGCTGCGgatcaaaaatcaatttcaattcaaccTGAAGAATTCAATTGTGACGACACTGAAGATAATATTTCTCAATCTTACAAGGACCATCATGATGAAAATCCTATCGAAGTAGTAGAAGAAACTTCCGCAAACGAAATAGGAATAGGAAAAGACTTACAGACATATCAACTAGAAAATTGCGCTGAACACTACGATACTTTCATTGCCAAGCATTTTCAAATATCATGCAGCATATGTCAACATTCAAGCAAGACTTTTTCTAAGCTTCGGCAGCATTTTGCGGAAAAGCACAAACAGGAGGAGACCTTTGTGTTTTGTTGTGGCAGGAAGATTAAAAGACCTCGCTGTCTTTTTGAACATATACATTCGCACCTTAATCCGgattattttaaatgtaaatactgTCCAAAGGTTCTAAAAGATCGAAGGAATTATTTGAAGCACATGTTACGTCATGAAGGTAAATTGGCACAGACACAAGAACAGAATCAGCCTGAAGGTGGCCATTTAACTAATGTGTACACTATTAATGATGCCAATTATAATAACATTTTAGTACACGAATTTCAAAGCAGTTCTGATCATTCTCATGACAGTTTGATTATACCTGACTTGAAAAATGTTAGTGAATCAATTCtgatgaaatcagagtgcattaaCTTCAAGGACAGCACTAATGGCGATAATTCAATGCTTGCCAGTTGTACATATGAAAGCGACAATGCTAATTCCATTAAAGAATCTCAAAAGCAAGATACAGACATTAACCCAATCGATGTCGTGGAAACGTATCAAGTCGGAACGGATCCAGAAGAAGACCAAGATGAATTTTTAGCTAAACATATACAATTAACTTGCCCCATATGCCAAGAACCCTGTAAAAATTTCATCAAGCTTCGACATCATTTCGCTGCTAAACATAATAAACAGCAGCCTTACATCTTATGCTGTGGACGGAAGCATAAAAGACGCCGTTGTTTAGTTGAGCACATTAAATCCCATCTGAATCCGGATTATTTCAAATGTAAATACTGCGCTAAAGTGTTGAAGGAACGACGCCACTTTTTGCACCACGTTGCAACACATGAAGGTACAGCATTCCGTTGCGGCATTTGCGATAGGAAGTTTGCTAACAAATATGTATTCGAAAGCCATAAAACGACTCACTCGCGAAGAGAGTTCTCCTGTTCAGAATGTGGTAAATCTTATGATAAGAGATATCAGCTTACTCGTCACGAGAGAGCAATACATCGTGGTAAAACATTTAGTCCTGATAAAGCACAAGAGAAGAACGAAATGATAGATGAAACTGAATTAAATATAACATCAATTGATGTTAAACCGGAACTGGTAATTGAAGCTGATAACATTGCCGAAGGAGGCAATATGAAAATGCACCCGGATCAAAGCAAAGAAATTCCCGACAATTGTTCTCAGCATAGTAGTGACCACTCCACAGAAGTAGAATCTGAAAAGAGCAATGCAACAGAATCAGAAGATATGGAAAGGTACTTACCATCCCATGCTATAAAACCCGGCGACTATGATGATTTCCTAGCAAAGCATATTAAGTTTACATGCAGCGTCTGCCAAGAATCATATAAGAATTTCACCCTACTTCGGCAACATTTTGCTGATGTACACAAACGGGTAGGTTATGTGTTGTGCTGTGGAACCAAACATAAAACTCGAAGTTTCCTGGTCGATCACATACACACCCACCTGAATCCGGAATATTTCAAATGTGAAGAATGTTCGAAAGTCTTTAAAGAGCGAAGAGGCCTAACATTGCACATTGCTTGGCATAAAGGGAAAATATACCgttgtaaaatatgtaaaagaaaatttttggataaaattaaatataaatctcATAAATCGACACATGCATCAAATAAGAGACAACAATTTCCTTGCCCGGAATGTGGAAAAGCGTTCGGCAACAAAGCTCTATTATCGTACCATCAAAAGGCTATGCATCTGAATATGTTTGTCAAACTTTGTGATATTTGTGGTGTAACTTTTCGTGGGTCTGAATGCTTCAAAAGCCATATGGAGAAACATAAGGGTGGTGTCGTACACACGTTTCCCTGTGATATTTGTGGACGAATATTGTCAGGAAAGCAAACTTTGAAGTTACACAAAATGTCGATACATCCAGAAGGTGGCGTACTTCCATATTCTTGCCACATTTGCAAGAAAACAGAAGCTACACGGAGCCGTTTGAATACTCATATTCGCAAATCTCATGCAACGAGCTATGATCACAAATGTACAATATGTGAAAGGGCgtttaaacaaagaaaaagtttAAGGgcCCATATGGTCGTTCACACCGGTGAACCACTGTTTAAATGTACTTGGTGCTCAAAGACATTTAACTCAAGTGGCAACTTGTCCAGTCATCGCCAAAGAGTCCATCCCAGTGAATATAAAGAATGGAAAAGACAAGACTATTTAGGTGATTTACCtcctaaattgaaattgaaaacaaatctatga
- Protein Sequence
- MAESAAATSLATLKSNSSWLCLTCWTFIHEFHQFYRRIENANLYYKGLVKAEIETEIEDPTLIPENVIIPETVLTEDAVHNSDIDETYENSDHLLESEKTIAEDDFATKCEGIGSSNTKSVDYYCQINKNVNDRNPLEVSTTEDSQTCEIIKANQILQSNTCAEEYNEQHLENVFDVPIYDSGDSIADSCNSETAKTKSQIKFPEKTNREDYNEFLAKHYTFSCIICQKSCNSFPMLRQHFAAVHKREAYVICCGKKIKTRRCLVDHIHTHFAADQKSISIQPEEFNCDDTEDNISQSYKDHHDENPIEVVEETSANEIGIGKDLQTYQLENCAEHYDTFIAKHFQISCSICQHSSKTFSKLRQHFAEKHKQEETFVFCCGRKIKRPRCLFEHIHSHLNPDYFKCKYCPKVLKDRRNYLKHMLRHEGKLAQTQEQNQPEGGHLTNVYTINDANYNNILVHEFQSSSDHSHDSLIIPDLKNVSESILMKSECINFKDSTNGDNSMLASCTYESDNANSIKESQKQDTDINPIDVVETYQVGTDPEEDQDEFLAKHIQLTCPICQEPCKNFIKLRHHFAAKHNKQQPYILCCGRKHKRRRCLVEHIKSHLNPDYFKCKYCAKVLKERRHFLHHVATHEGTAFRCGICDRKFANKYVFESHKTTHSRREFSCSECGKSYDKRYQLTRHERAIHRGKTFSPDKAQEKNEMIDETELNITSIDVKPELVIEADNIAEGGNMKMHPDQSKEIPDNCSQHSSDHSTEVESEKSNATESEDMERYLPSHAIKPGDYDDFLAKHIKFTCSVCQESYKNFTLLRQHFADVHKRVGYVLCCGTKHKTRSFLVDHIHTHLNPEYFKCEECSKVFKERRGLTLHIAWHKGKIYRCKICKRKFLDKIKYKSHKSTHASNKRQQFPCPECGKAFGNKALLSYHQKAMHLNMFVKLCDICGVTFRGSECFKSHMEKHKGGVVHTFPCDICGRILSGKQTLKLHKMSIHPEGGVLPYSCHICKKTEATRSRLNTHIRKSHATSYDHKCTICERAFKQRKSLRAHMVVHTGEPLFKCTWCSKTFNSSGNLSSHRQRVHPSEYKEWKRQDYLGDLPPKLKLKTNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -